STRINGSTRING
BPSS0908 BPSS0908 BPSS0909 BPSS0909 BPSS0962 BPSS0962 ugpE ugpE BPSL2406 BPSL2406 BPSS1439 BPSS1439 BPSS0701 BPSS0701 BPSS0747 BPSS0747 BPSS0783 BPSS0783 BPSS2160 BPSS2160 BPSS0120 BPSS0120
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
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colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
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Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
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[Homology]
Score
BPSS0908Putative surface-exposed protein; C-terminal region is similar to the C-terminal region of Bradyrhizobium japonicum Blr5538 protein blr5538 SWALL:BAC50803 (EMBL:AP005955) (762 aa) fasta scores: E(): 3e-36, 32.9% id in 708 aa. Similar to an internal region of Xanthomonas axonopodis outer membrane protein xac3546 SWALL:Q8PGS0 (EMBL:AE012003) (2190 aa) fasta scores: E(): 2.3e-31, 32.42% id in 885 aa. (771 aa)    
Predicted Functional Partners:
BPSS0909
OmpA family protein; C-terminus is similar to the C-terminal region of Escherichia coli outer membrane protein A precursor OmpA or TolG or Tut or Con SWALL:OMPA_ECOLI (SWALL:P02934) (346 aa) fasta scores: E(): 9.7e-16, 41.5% id in 159 aa. Full length CDS is similar to Haemophilus somnus antigen SWALL:Q48292 (EMBL:L07795) (273 aa) fasta scores: E(): 2e-10, 32.49% id in 277 aa.
 
   
 0.767
BPSS0962
Weakly similar to Serratia marcescens extracellular serine protease precursor SWALL:PRTT_SERMA (SWALL:P29805) (1045 aa) fasta scores: E(): 2.8e-32, 29.08% id in 1193 aa, and to Pseudomonas fluorescens serine protease homologue PspB SWALL:Q9ZNI5 (EMBL:AB015053) (1036 aa) fasta scores: E(): 8.4e-71, 36.9% id in 1176 aa. Autotransporter protein.
 
   
 0.693
ugpE
Putative ABC transporter permease; Part of the binding-protein-dependent transport system for sn-glycerol-3-phosphate; probably responsible for the translocation of the substrate across the membrane.
      
 0.497
BPSL2406
Putative membrane protein; Similar to Pseudomonas aeruginosa hypothetical protein pa4828 SWALL:Q9HUY2 (EMBL:AE004896) (151 aa) fasta scores: E(): 6.7e-09, 32.43% id in 148 aa, and to Synechocystis sp. hypothetical protein slr1186 SWALL:P74715 (EMBL:D90917) (148 aa) fasta scores: E(): 8.4e-07, 30.46% id in 151 aa.
  
     0.426
BPSS1439
Putative membrane-anchored cell surface protein; Similar to C-terminus of Staphylococcus epidermidis streptococcal hemagglutinin protein se2249 SWALL:AAO05891 (EMBL:AE016751) (2310 aa) fasta scores: E(): 1.8e-79, 40.67% id in 1480 aa, and to C-terminus of Streptococcus pneumoniae cell wall surface anchor family protein sp1772 SWALL:Q97P71 (EMBL:AE007470) (4776 aa) fasta scores: E(): 1.1e-73, 36.81% id in 1456 aa. Possible alternative translational start site.
  
   
0.409
BPSS0701
Similar to Comamonas acidovorans outer membrane porin protein 32 precursor Omp32 SWALL:OM32_COMAC (SWALL:P24305) (351 aa) fasta scores: E(): 1.7e-21, 32.97% id in 373 aa, and to Ralstonia solanacearum putative transmembrane outer membrane porin signal peptide protein rsc1737 or rs02925 SWALL:Q8XYM1 (EMBL:AL646066) (353 aa) fasta scores: E(): 8e-92, 67.42% id in 350 aa.
      
 0.404
BPSS0747
Similar to Bordetella pertussis outer membrane porin protein precursor SWALL:OMP_BORPE (SWALL:Q04064) (385 aa) fasta scores: E(): 1.6e-13, 32.18% id in 407 aa, and to Ralstonia solanacearum probable porin signal peptide protein rsp0051 or rs02026 SWALL:Q8XTQ5 (EMBL:AL646076) (382 aa) fasta scores: E(): 5.5e-40, 42.22% id in 386 aa.
      
 0.404
BPSS0783
Similar to Bordetella pertussis outer membrane porin protein precursor SWALL:OMP_BORPE (SWALL:Q04064) (385 aa) fasta scores: E(): 7.5e-13, 32.93% id in 413 aa, and to Ralstonia solanacearum probable porin signal peptide protein rsp1594 or rs02151 SWALL:Q8XPP4 (EMBL:AL646085) (374 aa) fasta scores: E(): 8.3e-78, 57.75% id in 374 aa.
      
 0.404
BPSS2160
Putative outer membrane porin protein; Similar to Burkholderia cepacia major porin protein Opcp1 SWALL:Q45106 (EMBL:D63823) (361 aa) fasta scores: E(): 3.7e-15, 31.59% id in 383 aa, and to Ralstonia solanacearum putative outer membrane porin signal peptide protein rsc2855 or rs00250 SWALL:Q8XVH6 (EMBL:AL646072) (389 aa) fasta scores: E(): 7.3e-30, 34.77% id in 394 aa, and to Ralstonia solanacearum putative porin signal peptide protein rsc2933 or rs00157 SWALL:Q8XV98 (EMBL:AL646072) (379 aa) fasta scores: E(): 4.4e-21, 32.46% id in 345 aa.
      
 0.404
BPSS0120
Similar to Yersinia pestis putative outer membrane fimbrial usher protein ypo0302 or y0562 SWALL:Q8ZJ27 (EMBL:AJ414142) (792 aa) fasta scores: E(): 1.4e-120, 42.67% id in 764 aa, and to Escherichia coli outer membrane usher protein precursor FanD SWALL:FAND_ECOLI (SWALL:P12050) (783 aa) fasta scores: E(): 5.4e-22, 22.91% id in 768 aa.
  
     0.402
Your Current Organism:
Burkholderia pseudomallei
NCBI taxonomy Id: 272560
Other names: B. pseudomallei K96243, Burkholderia pseudomallei K96243, Burkholderia pseudomallei str. K96243, Burkholderia pseudomallei strain K96243
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