STRINGSTRING
BPSS0962 BPSS0962 BPSS2052 BPSS2052 BPSL1661 BPSL1661 BPSS1728 BPSS1728 BPSL1692 BPSL1692 BPSS1742 BPSS1742 BPSS1029 BPSS1029 BPSL1775 BPSL1775 BPSS0908 BPSS0908 BPSS1204 BPSS1204 BPSL2237 BPSL2237
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
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Textmining
[Homology]
Score
BPSS0962Weakly similar to Serratia marcescens extracellular serine protease precursor SWALL:PRTT_SERMA (SWALL:P29805) (1045 aa) fasta scores: E(): 2.8e-32, 29.08% id in 1193 aa, and to Pseudomonas fluorescens serine protease homologue PspB SWALL:Q9ZNI5 (EMBL:AB015053) (1036 aa) fasta scores: E(): 8.4e-71, 36.9% id in 1176 aa. Autotransporter protein. (1131 aa)    
Predicted Functional Partners:
BPSS2052
Putative activator/secretion protein; Similar to Ralstonia solanacearum probable activation/secretion signal peptide protein Rsp0550 or Rs06123 SWALL:Q8XSC8 (EMBL:AL646079) (590 aa) fasta scores: E(): 9.6e-145, 62.7% id in 563 aa, and to Proteus mirabilis hemolysin activator protein precursor HpmB SWALL:HLYB_PROMI (SWALL:P16465) (561 aa) fasta scores: E(): 9.1e-28, 28.64% id in 412 aa, and to Serratia marcescens hemolysin activator protein precursor ShlB SWALL:HLYB_SERMA (SWALL:P15321) (557 aa) fasta scores: E(): 1.6e-25, 26.07% id in 510 aa. Possible alternative translational start sites.
 
  
 0.758
BPSL1661
Putative hemolysin-related protein; Similar to the C-terminal region of Ralstonia solanacearum putative hemagglutinin/hemolysin-related protein rsp1180 or rs05070 SWALL:Q8XQP2 (EMBL:AL646083) (4106 aa) fasta scores: E(): 6.4e-92, 30.67% id in 3218 aa, and also to the C-terminal region of Escherichia coli O157:H7 putative RTX family exoprotein z0615 SWALL:Q8X4H5 (EMBL:AE005229) (5188 aa) fasta scores: E(): 4e-38, 26.08% id in 3209 aa. Note: Contains a repeat region between residue 538 and residue 1362.
  
  
 0.740
BPSS1728
Putative secretion/activator protein; Similar to Proteus mirabilis hemolysin activator protein precursor HpmB SWALL:HLYB_PROMI (SWALL:P16465) (561 aa) fasta scores: E(): 2.6e-21, 25.86% id in 549 aa, and to Bordetella pertussis hemolysin activator-like protein FhaC precursor SWALL:FHAC_BORPE (SWALL:P35077) (584 aa) fasta scores: E(): 1.9e-53, 33.15% id in 567 aa.
  
  
 0.727
BPSL1692
Putative exported protein; Similar to Rhizobium meliloti hypothetical protein rb0509 or smb20530 SWALL:Q92W36 (EMBL:AL603643) (112 aa) fasta scores: E(): 1.2e-23, 66.33% id in 101 aa, and to Caulobacter crescentus hypothetical protein cc3254 SWALL:Q9A3F0 (EMBL:AE005989) (150 aa) fasta scores: E(): 2.4e-12, 52.94% id in 85 aa.
   
    0.723
BPSS1742
Similar to Pseudomonas putida outer membrane copper receptor OprC or pp4838 SWALL:AAN70407 (EMBL:AE016792) (688 aa) fasta scores: E(): 5.8e-81, 59.23% id in 655 aa, and to Pseudomonas stutzeri outer membrane protein NosA SWALL:Q8KLV2 (EMBL:AJ507426) (719 aa) fasta scores: E(): 9e-71, 49.48% id in 675 aa.
  
 
 
 0.707
BPSS1029
Putative tonB-family receptor; Similar to Pseudomonas putida ferric-pseudobactin bn7/bn8 receptor precursor PupB SWALL:PUPB_PSEPU (SWALL:P38047) (809 aa) fasta scores: E(): 1e-32, 26.81% id in 839 aa, and to Pseudomonas aeruginosa probable tonB-dependent receptor pa0151 SWALL:Q9I6Y1 (EMBL:AE004453) (795 aa) fasta scores: E(): 1e-155, 56.5% id in 807 aa, from codon 140 to 822 and to Yersinia pestis putative hydroxamate-type ferrisiderophore receptor ypo0956 SWALL:Q8ZHE4 (EMBL:AJ414145) (699 aa) fasta scores: E(): 7.2e-110, 45.76% id in 684 aa, and to Escherichia coli O157:H7 putative ir [...]
  
 
 
 0.703
BPSL1775
Putative iron uptake receptor precursor; Similar to Burkholderia cepacia ornibactin receptor precursor OrbA SWALL:Q9F480 (EMBL:AF013993) (755 aa) fasta scores: E(): 5e-203, 68.7% id in 754 aa, and to Erwinia chrysanthemi ferrichrysobactin receptor precursor Ftc SWALL:FCT_ERWCH (SWALL:Q47162) (735 aa) fasta scores: E(): 4.2e-76, 34.5% id in 713 aa.
  
 
 
 0.697
BPSS0908
Putative surface-exposed protein; C-terminal region is similar to the C-terminal region of Bradyrhizobium japonicum Blr5538 protein blr5538 SWALL:BAC50803 (EMBL:AP005955) (762 aa) fasta scores: E(): 3e-36, 32.9% id in 708 aa. Similar to an internal region of Xanthomonas axonopodis outer membrane protein xac3546 SWALL:Q8PGS0 (EMBL:AE012003) (2190 aa) fasta scores: E(): 2.3e-31, 32.42% id in 885 aa.
 
   
 0.693
BPSS1204
Putative iron transport receptor protein; Similar to Pseudomonas aeruginosa hydroxamate-type ferrisiderophore receptor PiuA or Fiu or pa4514 SWALL:O68590 (EMBL:AF051690) (753 aa) fasta scores: E(): 1.1e-134, 49.12% id in 741 aa, and to Escherichia coli O157:H7 putative outer membrane receptor for iron transport z1026 or ecs0883 SWALL:Q8X7W7 (EMBL:AE005261) (760 aa) fasta scores: E(): 7.3e-73, 36.9% id in 775 aa, and to Escherichia coli probable tonB-dependent receptor YbiL precursor or b0805 SWALL:YBIL_ECOLI (SWALL:P75780) (760 aa) fasta scores: E(): 7.3e-73, 36.77% id in 775 aa.
  
 
 
 0.691
BPSL2237
Putative exported lipase; Similar to Xanthomonas campestris lipase/esterase EstA or xcc3148 SWALL:Q8P634 (EMBL:AE012430) (594 aa) fasta scores: E(): 7e-14, 23.28% id in 627 aa, and to Xylella fastidiosa lipase/esterase xf0781 SWALL:Q9PF97 (EMBL:AE003919) (597 aa) fasta scores: E(): 1.3e-10, 23.29% id in 631 aa.
  
   
 0.660
Your Current Organism:
Burkholderia pseudomallei
NCBI taxonomy Id: 272560
Other names: B. pseudomallei K96243, Burkholderia pseudomallei K96243, Burkholderia pseudomallei str. K96243, Burkholderia pseudomallei strain K96243
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