STRINGSTRING
BPSS1101 BPSS1101 BPSS1100 BPSS1100 BPSS0363 BPSS0363 BPSL2880 BPSL2880 BPSS1099 BPSS1099 BPSL3000 BPSL3000
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
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[Homology]
Score
BPSS1101Putative exported protein; Similar to Ralstonia solanacearum putative signal peptide protein rsc1315 or rs02837 SWALL:Q8XZT0 (EMBL:AL646063) (141 aa) fasta scores: E(): 3.5e-08, 35.71% id in 140 aa. (159 aa)    
Predicted Functional Partners:
BPSS1100
Putative cation transport ATPase protein; Similar to Escherichia coli, and Escherichia coli O157:H7 cation transport ATPase MgtA or Mgt or CorB or b4242 or z5853 or ecs5219 SWALL:ATMA_ECOLI (SWALL:P39168) (898 aa) fasta scores: E(): 9.1e-46, 27.56% id in 849 aa, and to Methanobacterium thermoautotrophicum cation-transporting p-ATPase pacL mth1001 SWALL:O27082 (EMBL:AE000873) (844 aa) fasta scores: E(): 7.2e-64, 35.3% id in 830 aa, and to Streptomyces coelicolor putative transport ATPase sco2499 or scc121.02C SWALL:Q9L2I4 (EMBL:AL939112) (1472 aa) fasta scores: E(): 4.6e-48, 32.07% id i [...]
       0.531
BPSS0363
Similar to Ralstonia solanacearum hypothetical protein rsc1364 or rs04646 SWALL:Q8XZN1 (EMBL:AL646064) (156 aa) fasta scores: E(): 3.5e-24, 49.67% id in 155 aa, and to Pseudomonas aeruginosa hypothetical protein pa1206 SWALL:Q9I4D2 (EMBL:AE004550) (157 aa) fasta scores: E(): 6e-14, 38.81% id in 152 aa.
  
     0.449
BPSL2880
Putative lipoprotein; Similar to Ralstonia solanacearum hypothetical protein rsc0600 or rs04845 SWALL:Q8Y1T9 (EMBL:AL646060) (211 aa) fasta scores: E(): 1.8e-16, 36.57% id in 216 aa.
  
     0.437
BPSS1099
Putative membrane protein; Similar to Ralstonia solanacearum probable transmembrane protein rsc0198 or rs00630 SWALL:Q8Y2Y3 (EMBL:AL646058) (213 aa) fasta scores: E(): 6.9e-45, 56.28% id in 199 aa.
       0.433
BPSL3000
Putative lipoprotein; Similar to Ralstonia solanacearum putative lipoprotein rsc2818 or rs00287 SWALL:Q8XVL2 (EMBL:AL646072) (213 aa) fasta scores: E(): 7.4e-16, 42.38% id in 151 aaWeakly similar to Neisseria meningitidis putative periplasmic protein nma0881 SWALL:Q9JVD8 (EMBL:AL162754) (203 aa) fasta scores: E(): 0.0044, 27.66% id in 188 aa.
  
     0.425
Your Current Organism:
Burkholderia pseudomallei
NCBI taxonomy Id: 272560
Other names: B. pseudomallei K96243, Burkholderia pseudomallei K96243, Burkholderia pseudomallei str. K96243, Burkholderia pseudomallei strain K96243
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