STRINGSTRING
BPSS1209 BPSS1209 BPSS0407 BPSS0407 BPSS2148 BPSS2148 BPSS0402 BPSS0402 BPSS2078 BPSS2078 BPSS1210 BPSS1210 BPSS1211 BPSS1211 BPSS2063 BPSS2063
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
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colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
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Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
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[Homology]
Score
BPSS1209Putative transposase (fragment); Pfam match to entry PF00665 rve, Integrase core domain, score 19.2, E-value 1.5e-05. (121 aa)    
Predicted Functional Partners:
BPSS0407
Similar to Rhodobacter capsulatus putative insertion element SWALL:O68064 (EMBL:AF010496) (191 aa) fasta scores: E(): 4e-49, 68.68% id in 182 aa, and to Ralstonia solanacearum ISrso14-transposase ORFB protein SWALL:Q8XF72 (EMBL:AL646083) (275 aa) fasta scores: E(): 1.7e-11, 34.18% id in 234 aa. Note: Also similar in its N-terminal region to BPSS0661 (276 aa) fasta scores: E(): 5.1e-52, 97.143% identity in 140 aa overlap and in its C-terminal region to BPSS0662 (59 aa) fasta scores: E(): 3.6e-18, 96.429% identity in 56 aa overlap.
 
     0.709
BPSS2148
Conserved hypothetical protein (fragment); PF0872.
  
     0.640
BPSS0402
Probable fusion protein. N-terminal region highly similar to Bacteriophage phiE125 Gp43 SWALL:Q8W6Q7 (EMBL:AF447491) (270 aa) fasta scores: E(): 5e-90, 99.61% id in 258 aa, and C-terminal region to Pseudomonas putida transposase, ORFB pp4420 SWALL:AAN69997 (EMBL:AE016790) (269 aa) fasta scores: E(): 1.3e-18, 48.07% id in 156 aa; N-terminal region highly similar to Bacteriophage phiE125 Gp43 SWALL:Q8W6Q7 (EMBL:AF447491) (270 aa) fasta scores: E(): 5e-90, 99.61% id in 258 aa, and C-terminal region to Pseudomonas putida transposase, ORFB pp4420 SWALL:AAN69997 (EMBL:AE016790) (269 aa) fast [...]
  
     0.631
BPSS2078
Pfam match to entry PF03050 Transposase_25, Transposase IS66 family, score 407.2, E-value 1e-119.
 
     0.538
BPSS1210
Similar to Ralstonia solanacearum hypothetical protein rsc3217 or rs02434 SWALL:Q8XUH1 (EMBL:AL646074) (90 aa) fasta scores: E(): 1.1e-19, 60.71% id in 84 aa, and to Ralstonia solanacearum hypothetical protein rsc0961 or rs06040 SWALL:Q8Y0T2 (EMBL:AL646061) (88 aa) fasta scores: E(): 3.2e-15, 53.01% id in 83 aa, and to Ralstonia solanacearum hypothetical protein rsp0515 or rs00394 SWALL:Q8XSG1 (EMBL:AL646079) (88 aa) fasta scores: E(): 7e-15, 52.94% id in 85 aa.
       0.455
BPSS1211
Putative membrane protein; Similar to Pseudomonas aeruginosa hypothetical protein Pa0259 SWALL:Q9I6N0 (EMBL:AE004464) (480 aa) fasta scores: E(): 4.5e-15, 28.39% id in 472 aa.
       0.454
BPSS2063
Hypothetical protein; No significant database matches to the full length CDS. C-terminus is similar to the C-terminal regions of Pseudomonas alcaligenes hypothetical protein SWALL:Q9F127 (EMBL:AF173167) (282 aa) fasta scores: E(): 2e-20, 45% id in 140 aa, and to Pseudomonas syringae hypothetical protein SWALL:Q9L6V8 (EMBL:AF232005) (507 aa) fasta scores: E(): 2.2e-19, 45.92% id in 135 aa.
 
     0.445
Your Current Organism:
Burkholderia pseudomallei
NCBI taxonomy Id: 272560
Other names: B. pseudomallei K96243, Burkholderia pseudomallei K96243, Burkholderia pseudomallei str. K96243, Burkholderia pseudomallei strain K96243
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