STRINGSTRING
BPSS1228 BPSS1228 BPSL0608 BPSL0608 BPSS1227 BPSS1227 BPSS1566 BPSS1566 BPSS0224 BPSS0224 BPSL3373 BPSL3373
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
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colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
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Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
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[Homology]
Score
BPSS1228Putative cation transporter; Similar to Pseudomonas fluorescens CmaX SWALL:Q9S4T9 (EMBL:AF115334) (331 aa) fasta scores: E(): 3.2e-19, 28.32% id in 293 aa, and to Pseudomonas aeruginosa hypothetical protein Pa1873 SWALL:Q9I2M4 (EMBL:AE004613) (340 aa) fasta scores: E(): 2.9e-77, 62.91% id in 329 aa, and to Pseudomonas aeruginosa putative cytoplasmic membrane-associated protein CmaX or pa1773 SWALL:Q9ZIH2 (EMBL:AF027290) (332 aa) fasta scores: E(): 1.1e-22, 28.48% id in 337 aa. (340 aa)    
Predicted Functional Partners:
BPSL0608
PAP2 superfamily; Similar to Aeromonas hydrophila hypothetical protein SWALL:Q9X647 (EMBL:AF131869) (264 aa) fasta scores: E(): 2.7e-11, 32.66% id in 251 aa.
  
    0.479
BPSS1227
Similar to Streptomyces coelicolor hypothetical protein sco7282 or sc5h1.10C SWALL:Q9X7R8 (EMBL:AL939131) (160 aa) fasta scores: E(): 4.2e-28, 50.31% id in 159 aa, and to Bradyrhizobium japonicum Blr2409 protein SWALL:BAC47674 (EMBL:AP005943) (162 aa) fasta scores: E(): 7e-25, 42.4% id in 158 aa, and to Rhizobium loti hypothetical protein Mll5357 SWALL:Q98C01 (EMBL:AP003006) (156 aa) fasta scores: E(): 3.2e-24, 44.23% id in 156 aa.
       0.473
BPSS1566
Probable phosphate transporter; Similar to Escherichia coli low-affinity inorganic phosphate transporter 1 PitA or Pit or b3493 or c4291 or z4893 or ecs4365 SWALL:PITA_ECOLI (SWALL:P37308) (499 aa) fasta scores: E(): 8.9e-26, 43.53% id in 503 aa, and to Pseudomonas aeruginosa probable phosphate transporter pa0450 SWALL:Q9I668 (EMBL:AE004482) (540 aa) fasta scores: E(): 6.9e-120, 64.97% id in 511 aa.
 
   
 0.446
BPSS0224
Putative cation-transporting ATPase membrane protein; No significant database matches to the full length CDS. N-terminal region is similar to Similar to Homo sapiens copper-transporting ATPase 2 ATP7B or WND or PWD or WC1 SWALL:AT7B_HUMAN (SWALL:P35670) (1465 aa) fasta scores: E(): 3e-07, 27% id in 300 aa. C-terminal region is similar to Ralstonia solanacearum probable cation-transporting ATPase transmembrane protein rsc3348 or rs02623 SWALL:Q8XU45 (EMBL:AL646074) (748 aa) fasta scores: E(): 1.1e-121, 59.89% id in 768 aa, and to Synechocystis sp. cation-transporting ATPase PacS or sll1 [...]
     
 0.418
BPSL3373
Putative ethanolamine permease; Lies upstream of a CDS for ethanolamine utilisation. Similar to Xanthomonas campestris ethanolamin permease EutP or Xcc2259 SWALL:AAM41538 (EMBL:AE012333) (454 aa) fasta scores: E(): 3.4e-119, 72.66% id in 428 aa, and to Rhodococcus erythropolis ethanolamine permease EutP SWALL:Q53148 (EMBL:L24492) (488 aa) fasta scores: E(): 1.6e-38, 35.46% id in 454 aa.
 
     0.417
Your Current Organism:
Burkholderia pseudomallei
NCBI taxonomy Id: 272560
Other names: B. pseudomallei K96243, Burkholderia pseudomallei K96243, Burkholderia pseudomallei str. K96243, Burkholderia pseudomallei strain K96243
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