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BPSS1356 BPSS1356 BPSL0487 BPSL0487 BPSL0734 BPSL0734 BPSL0482 BPSL0482 BPSL0479 BPSL0479 BPSS1608 BPSS1608 BPSL1029 BPSL1029 BPSL0478 BPSL0478 BPSS0135 BPSS0135 BPSS2064 BPSS2064 pilV pilV
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
BPSS1356Hypothetical protein; No significant database matches. (1125 aa)    
Predicted Functional Partners:
BPSL0487
Hypothetical protein; Poor database matches. Similar to Erwinia chrysanthemi hypothetical protein VfmA SWALL:Q8RKD3 (EMBL:AJ438188) (275 aa) fasta scores: E(): 0.00013, 22.61% id in 252 aa.
  
     0.774
BPSL0734
Putative two-component transcriptional response regulator; From codon 189-321 similar to Xanthomonas axonopodis two-component system regulatory protein colR or xac1221 SWALL:AAM36093 (EMBL:AE011752) (238 aa) fasta scores: E(): 0.0042, 24.21% id in 128 aa, and to Ralstonia solanacearum probable two-component system response regulator transcription regulator protein rsc1073 or rs04004 SWALL:Q8Y0H1 (EMBL:AL646062) (237 aa) fasta scores: E(): 0.0087, 30.46% id in 128 aa.
  
     0.752
BPSL0482
Conserved hypothetical protein; Similar to Corynebacterium glutamicum 2-methylcitrate synthase 2 PrpC2 or cgl0659 SWALL:BAB98052 (EMBL:AF434799) (383 aa) fasta scores: E(): 6.2e-07, 26.81% id in 358 aa, and to Antarctic bacterium DS2-3R citrate synthase GltA or CisY SWALL:CISY_ABDS2 (SWALL:O34002) (379 aa) fasta scores: E(): 0.004, 23.59% id in 356 aa.
  
     0.737
BPSL0479
Similar to Streptomyces coelicolor putative ABC transporter ATP-binding subunit sco2305 or scc30.13 SWALL:Q9L008 (EMBL:AL352972) (308 aa) fasta scores: E(): 5.7e-09, 30.59% id in 317 aa, and to the N-terminal region of Rhodobacter capsulatus molybdenum transport ATP-binding protein ModC or MolD SWALL:MODC_RHOCA (SWALL:Q08381) (363 aa) fasta scores: E(): 1.8e-08, 28.98% id in 314 aa.
  
     0.715
BPSS1608
Conserved hypothetical protein; Similar to Agrobacterium tumefaciens acetyltransferase atu4896 or agr_l_4 SWALL:Q8U6B2 (EMBL:AE009417) (200 aa) fasta scores: E(): 7.2e-06, 26.08% id in 184 aa, and to Thermoanaerobacter tengcongensis acetyltransferases, including N-acetylases of ribosomal proteins riml or tte1540 SWALL:Q8R9Q9 (EMBL:AE013110) (185 aa) fasta scores: E(): 0.0013, 25.54% id in 184 aa.
  
     0.668
BPSL1029
Similar to Bordetella pertussis outer membrane porin protein precursor SWALL:OMP_BORPE (SWALL:Q04064) (385 aa) fasta scores: E(): 3.9e-11, 29.97% id in 387 aa, and to Ralstonia solanacearum probable porin signal peptide protein rsc2136 or rs01467 SWALL:Q8XXH8 (EMBL:AL646068) (352 aa) fasta scores: E(): 3.6e-43, 41.22% id in 376 aa.
  
     0.664
BPSL0478
Putative membrane protein; No significant database matches to the full length CDS. C-terminus is similar to the C-terminal regions of Rhizobium meliloti putative ABC transporter permease protein rb0870 or smb21204 SWALL:Q92V47 (EMBL:AL603645) (370 aa) fasta scores: E(): 7.5e-09, 28.5% id in 228 aa, and Brucella melitensis daunorubicin resistance transmembrane protein bmeii0801 SWALL:Q8YBT5 (EMBL:AE009714) (379 aa) fasta scores: E(): 2.9e-07, 24.59% id in 305 aa.
  
     0.632
BPSS0135
Similar to Ralstonia solanacearum hypothetical protein rsp1479 or rs03064 SWALL:Q8XQ07 (EMBL:AL646085) (150 aa) fasta scores: E(): 2e-17, 45.86% id in 133 aa.
  
     0.619
BPSS2064
Putative porin protein; Similar to Comamonas acidovorans outer membrane porin protein 32 precursor omp32 SWALL:OM32_COMAC (SWALL:P24305) (351 aa) fasta scores: E(): 6.7e-16, 28.64% id in 370 aa, and to Ralstonia solanacearum putative porin signal peptide protein rsc2760 or rs00094 SWALL:Q8XVR9 (EMBL:AL646071) (353 aa) fasta scores: E(): 5.9e-46, 42.12% id in 349 aa. Similar to BPSL1029, 65.565% identity (66.854% ungapped) in 363 aa overlap.
  
     0.594
pilV
Putative type IV pilus biosynthesis protein; Similar to Escherichia coli minor fimbrial subunit PilV SWALL:Q93AE4 (EMBL:AF422146) (454 aa) fasta scores: E(): 0.00091, 27.79% id in 385 aa, and to Salmonella typhi PilV or sty4550 SWALL:O51801 (EMBL:AF000001) (435 aa) fasta scores: E(): 1.4e-05, 24.45% id in 458 aa.
  
     0.589
Your Current Organism:
Burkholderia pseudomallei
NCBI taxonomy Id: 272560
Other names: B. pseudomallei K96243, Burkholderia pseudomallei K96243, Burkholderia pseudomallei str. K96243, Burkholderia pseudomallei strain K96243
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