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BPSS1393 BPSS1393 sctT sctT sctN sctN BPSS1396 BPSS1396 sctL sctL sctJ sctJ BPSS1398 BPSS1398 BPSS1399 BPSS1399 BPSS1391 BPSS1391
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
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colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
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[Homology]
Score
BPSS1393Hypothetical protein; Previously sequenced as Burkholderia pseudomallei ORF7 SWALL:Q93KZ9 (EMBL:AF074878) (168 aa) fasta scores: E(): 3.1e-52, 100% id in 168 aa. (168 aa)    
Predicted Functional Partners:
sctT
Similar to Xanthomonas campestris type III secretion associated protein Hrpb8 SWALL:Q56786 (EMBL:U33548) (276 aa) fasta scores: E(): 7.1e-46, 44.64% id in 271 aa. Identical to Burkholderia pseudomallei type III secretion-associated protein SctT SWALL:Q93L00 (EMBL:AF074878) (240 aa) fasta scores: E(): 6.7e-93, 100% id in 240 aa. Similar to Xanthomonas campestris HrpB8 protein HrcT or xcc1238 SWALL:AAM40536 (EMBL:AE012222) (276 aa) fasta scores: E(): 1.6e-46, 44.98% id in 269 aa.
       0.782
sctN
Almost identical to the previously sequenced Burkholderia pseudomallei type III secretion associated protein SctN SWALL:Q93KZ8 (EMBL:AF074878) (449 aa) fasta scores: E(): 8.6e-155, 99.77% id in 449 aa. Similar to Xanthomonas axonopodis HrcN protein or xac0412 SWALL:Q8PQB6 (EMBL:AE011666) (442 aa) fasta scores: E(): 1.2e-107, 70.48% id in 437 aa, and to Xanthomonas campestris probable ATP synthase HrpB6 SWALL:HRB6_XANCV (SWALL:P80153) (442 aa) fasta scores: E(): 3.6e-107, 70.48% id in 437 aa.
       0.725
BPSS1396
Hypothetical protein; Almost identical to the previously sequenced Burkholderia pseudomallei hypothetical 27.8 kDa protein SWALL:Q93KZ6 (EMBL:AF074878) (255 aa) fasta scores: E(): 7.5e-105, 99.6% id in 255 aa.
       0.725
sctL
Previously sequenced as Burkholderia pseudomallei type III secretion-associated protein SctL SWALL:Q93KZ7 (EMBL:AF074878) (289 aa) fasta scores: E(): 2.4e-103, 100% id in 289 aa. Similar to Ralstonia solanacearum protein HrpF or rsp0869 or rs01640 SWALL:Q8XRH8 (EMBL:AL646081) (301 aa) fasta scores: E(): 1.8e-15, 31.25% id in 288 aa, and to Xanthomonas axonopodis protein HrpB5 or xac0411 SWALL:AAM35302 (EMBL:AE011666) (233 aa) fasta scores: E(): 4.9e-15, 31.17% id in 247 aa.
       0.721
sctJ
Almost identical to the previously sequenced Burkholderia pseudomallei type III secretion associated protein SctJ SWALL:Q93KZ5 (EMBL:AF074878) (274 aa) fasta scores: E(): 1e-101, 99.27% id in 274 aa. Similar to Xanthomonas campestris HrcJ protein or xcc1233 SWALL:AAM40531 (EMBL:AE012222) (254 aa) fasta scores: E(): 1.2e-44, 53.01% id in 249 aa, and to Ralstonia solanacearum Hrp conserved lipoprotein HrcJ transmembrane or rsp0867 or rs01638 SWALL:Q52492 (EMBL:AJ245811) (269 aa) fasta scores: E(): 3.1e-44, 52.29% id in 262 aa.
       0.695
BPSS1398
Hypothetical protein; Previously sequenced as Burkholderia pseudomallei hypothetical 13.9 kDa protein SWALL:Q93KZ4 (EMBL:AF074878) (128 aa) fasta scores: E(): 1.4e-41, 100% id in 128 aa.
       0.592
BPSS1399
Hypothetical protein; Highly similar to the previously sequenced Burkholderia pseudomallei hypothetical 19.6 kDa protein SWALL:Q93KZ3 (EMBL:AF074878) (178 aa) fasta scores: E(): 2.4e-70, 98.87% id in 178 aa. N-terminus is similar to the N-terminal region of Ralstonia solanacearum HRPK protein rsp0865 or rs01636 SWALL:Q52490 (EMBL:AJ245811) (158 aa) fasta scores: E(): 2.2e-06, 29.36% id in 126 aa.
       0.507
BPSS1391
Putative AraC family regulator of pathogenicity genes; Similar to Ralstonia solanacearum regulatory protein HrpB or rsp0873 or rs01644 SWALL:HRPB_RALSO (SWALL:P31778) (477 aa) fasta scores: E(): 5.6e-49, 34.35% id in 492 aa. Almost identical to the previously sequenced Burkholderia pseudomallei hypothetical 54.7 kDa protein SWALL:Q93L01 (EMBL:AF074878) (483 aa) fasta scores: E(): 4.9e-195, 99.58% id in 483 aa.
       0.459
Your Current Organism:
Burkholderia pseudomallei
NCBI taxonomy Id: 272560
Other names: B. pseudomallei K96243, Burkholderia pseudomallei K96243, Burkholderia pseudomallei str. K96243, Burkholderia pseudomallei strain K96243
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