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BPSS1402 BPSS1402 sctV sctV sctU sctU sctR sctR sctQ sctQ sctS sctS
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
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colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
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Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
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Textmining
[Homology]
Score
BPSS1402Hypothetical protein; Highly similar to the previously sequenced Burkholderia pseudomallei hypothetical 24.8 kDa protein SWALL:Q9ZGR2 (EMBL:AF074878) (227 aa) fasta scores: E(): 1.4e-73, 96.91% id in 227 aa. (228 aa)    
Predicted Functional Partners:
sctV
Putative type III secretion-associated protein; Almost identical to the previously sequenced Burkholderia pseudomallei type III secretion-associated protein SctV SWALL:Q93KZ1 (EMBL:AF074878) (705 aa) fasta scores: E(): 0, 99.71% id in 705 aa. Similar to Pseudomonas glumae putative HrpO SWALL:Q9F1J5 (EMBL:AB053455) (698 aa) fasta scores: E(): 7.7e-193, 77.69% id in 704 aa.
     
 0.801
sctU
Putative type III secretion-associated protein; Almost identical to the previously sequenced Burkholderia pseudomallei type III secretion-associated protein SctU SWALL:Q93KZ2 (EMBL:AF074878) (351 aa) fasta scores: E(): 5.4e-132, 99.14% id in 352 aa. Similar to Ralstonia solanacearum hypersensitivity response secretion protein HrcU or HrpN or rsp0864 or rs01635 SWALL:HRCU_RALSO (SWALL:P35652) (357 aa) fasta scores: E(): 2.8e-60, 50% id in 346 aa, and to Xanthomonas campestris HrcU homolog SWALL:Q9RBK8 (EMBL:AF160974) (357 aa) fasta scores: E(): 3e-57, 45.79% id in 345 aa.
     
 0.743
sctR
Previously sequenced as Burkholderia pseudomallei type III secretion-associated protein SctR SWALL:Q9Z3E2 (EMBL:AF074878) (216 aa) fasta scores: E(): 3.2e-78, 100% id in 216 aa.
     
 0.435
sctQ
Similar to the previously sequenced Burkholderia pseudomallei type III secretion-associated protein SctQ SWALL:Q9ZGR1 (EMBL:AF074878) (310 aa) fasta scores: E(): 4.2e-117, 98.06% id in 310 aa. Similar to Zea mays fdr3 SWALL:Q94KV5 (EMBL:AF262623) (355 aa) fasta scores: E(): 1.1e-16, 33.33% id in 315 aa, and to Ralstonia solanacearum protein HrpQ or HrcQ or rsp0861 or rs01632 SWALL:Q52489 (EMBL:AJ245811) (354 aa) fasta scores: E(): 1.8e-12, 29.09% id in 299 aa.
     
 0.434
sctS
Putative type III secretion-associated protein; Highly similar to the previously sequenced Burkholderia pseudomallei type III secretion-associated protein SctS SWALL:Q9ZGR0 (EMBL:AF074878) (87 aa) fasta scores: E(): 3.7e-31, 98.85% id in 87 aa. Similar to Ralstonia solanacearum HrpU protein or HrcS or rsp0859 or rs01630 SWALL:Q52487 (EMBL:AJ245811) (86 aa) fasta scores: E(): 3.4e-14, 58.53% id in 82 aa, and to Xanthomonas oryzae pv. oryzicola HrcS SWALL:Q93MH8 (EMBL:AF404819) (86 aa) fasta scores: E(): 2e-13, 52.32% id in 86 aa.
     
 0.424
Your Current Organism:
Burkholderia pseudomallei
NCBI taxonomy Id: 272560
Other names: B. pseudomallei K96243, Burkholderia pseudomallei K96243, Burkholderia pseudomallei str. K96243, Burkholderia pseudomallei strain K96243
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