STRINGSTRING
sctQ sctQ sctL sctL sctS sctS sctN sctN sctT sctT sctR sctR sctJ sctJ bsaV bsaV sctC sctC FlgJ FlgJ BPSS1626 BPSS1626
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
sctQSimilar to the previously sequenced Burkholderia pseudomallei type III secretion-associated protein SctQ SWALL:Q9ZGR1 (EMBL:AF074878) (310 aa) fasta scores: E(): 4.2e-117, 98.06% id in 310 aa. Similar to Zea mays fdr3 SWALL:Q94KV5 (EMBL:AF262623) (355 aa) fasta scores: E(): 1.1e-16, 33.33% id in 315 aa, and to Ralstonia solanacearum protein HrpQ or HrcQ or rsp0861 or rs01632 SWALL:Q52489 (EMBL:AJ245811) (354 aa) fasta scores: E(): 1.8e-12, 29.09% id in 299 aa. (310 aa)    
Predicted Functional Partners:
sctL
Previously sequenced as Burkholderia pseudomallei type III secretion-associated protein SctL SWALL:Q93KZ7 (EMBL:AF074878) (289 aa) fasta scores: E(): 2.4e-103, 100% id in 289 aa. Similar to Ralstonia solanacearum protein HrpF or rsp0869 or rs01640 SWALL:Q8XRH8 (EMBL:AL646081) (301 aa) fasta scores: E(): 1.8e-15, 31.25% id in 288 aa, and to Xanthomonas axonopodis protein HrpB5 or xac0411 SWALL:AAM35302 (EMBL:AE011666) (233 aa) fasta scores: E(): 4.9e-15, 31.17% id in 247 aa.
 
 
 0.991
sctS
Putative type III secretion-associated protein; Highly similar to the previously sequenced Burkholderia pseudomallei type III secretion-associated protein SctS SWALL:Q9ZGR0 (EMBL:AF074878) (87 aa) fasta scores: E(): 3.7e-31, 98.85% id in 87 aa. Similar to Ralstonia solanacearum HrpU protein or HrcS or rsp0859 or rs01630 SWALL:Q52487 (EMBL:AJ245811) (86 aa) fasta scores: E(): 3.4e-14, 58.53% id in 82 aa, and to Xanthomonas oryzae pv. oryzicola HrcS SWALL:Q93MH8 (EMBL:AF404819) (86 aa) fasta scores: E(): 2e-13, 52.32% id in 86 aa.
 
  
 0.976
sctN
Almost identical to the previously sequenced Burkholderia pseudomallei type III secretion associated protein SctN SWALL:Q93KZ8 (EMBL:AF074878) (449 aa) fasta scores: E(): 8.6e-155, 99.77% id in 449 aa. Similar to Xanthomonas axonopodis HrcN protein or xac0412 SWALL:Q8PQB6 (EMBL:AE011666) (442 aa) fasta scores: E(): 1.2e-107, 70.48% id in 437 aa, and to Xanthomonas campestris probable ATP synthase HrpB6 SWALL:HRB6_XANCV (SWALL:P80153) (442 aa) fasta scores: E(): 3.6e-107, 70.48% id in 437 aa.
 
 
 0.964
sctT
Similar to Xanthomonas campestris type III secretion associated protein Hrpb8 SWALL:Q56786 (EMBL:U33548) (276 aa) fasta scores: E(): 7.1e-46, 44.64% id in 271 aa. Identical to Burkholderia pseudomallei type III secretion-associated protein SctT SWALL:Q93L00 (EMBL:AF074878) (240 aa) fasta scores: E(): 6.7e-93, 100% id in 240 aa. Similar to Xanthomonas campestris HrpB8 protein HrcT or xcc1238 SWALL:AAM40536 (EMBL:AE012222) (276 aa) fasta scores: E(): 1.6e-46, 44.98% id in 269 aa.
 
  
 0.959
sctR
Previously sequenced as Burkholderia pseudomallei type III secretion-associated protein SctR SWALL:Q9Z3E2 (EMBL:AF074878) (216 aa) fasta scores: E(): 3.2e-78, 100% id in 216 aa.
 
  
 0.952
sctJ
Almost identical to the previously sequenced Burkholderia pseudomallei type III secretion associated protein SctJ SWALL:Q93KZ5 (EMBL:AF074878) (274 aa) fasta scores: E(): 1e-101, 99.27% id in 274 aa. Similar to Xanthomonas campestris HrcJ protein or xcc1233 SWALL:AAM40531 (EMBL:AE012222) (254 aa) fasta scores: E(): 1.2e-44, 53.01% id in 249 aa, and to Ralstonia solanacearum Hrp conserved lipoprotein HrcJ transmembrane or rsp0867 or rs01638 SWALL:Q52492 (EMBL:AJ245811) (269 aa) fasta scores: E(): 3.1e-44, 52.29% id in 262 aa.
 
  
 0.949
bsaV
Surface presentation of antigens protein; Similar to Salmonella typhimurium SpaO SWALL:Q57524 (EMBL:U29358) (303 aa) fasta scores: E(): 0.045, 28.34% id in 314 aa.
  
  
  0.947
sctC
Putative type III secretion system protein; Almost identical to the previously sequenced Burkholderia pseudomallei typeIII secretion-system associated protein SctC SWALL:Q93L02 (EMBL:AF074878) (588 aa) fasta scores: E(): 7.7e-207, 99.49% id in 588 aa. Similar to Ralstonia solanacearum hypersensitivity response secretion protein HrpA precursor HrpA or HrcC or rsp0874 or rs01645 SWALL:HRPA_RALSO (SWALL:Q52498) (568 aa) fasta scores: E(): 1.3e-84, 45.58% id in 577 aa, and to Burkholderia cepacia genomovar III BcsCC SWALL:Q8VP21 (EMBL:AY028431) (681 aa) fasta scores: E(): 2.9e-39, 37.1% id [...]
 
  
 0.945
FlgJ
Similar to Salmonella typhimurium peptidoglycan hydrolase FlgJ or FlaZ SWALL:FLGJ_SALTY (SWALL:P15931) (316 aa) fasta scores: E(): 3.5e-32, 43.43% id in 297 aa, and to Vibrio parahaemolyticus peptidoglycan hydrolase FlgJ SWALL:FLGJ_VIBPA (SWALL:Q9X9J3) (308 aa) fasta scores: E(): 6.9e-26, 33.97% id in 312 aa.
  
  
 0.931
BPSS1626
Putative type III secretion protein; Similar to Burkholderia pseudomallei SctL SWALL:Q93KZ7 (EMBL:AF074878) (289 aa) fasta scores: E(): 1.6e-30, 45.79% id in 238 aa, and to Ralstonia solanacearum HrpF protein or rsp0869 or rs01640 SWALL:Q8XRH8 (EMBL:AL646081) (301 aa) fasta scores: E(): 2.8e-16, 38.26% id in 230 aa.
 
 
 0.930
Your Current Organism:
Burkholderia pseudomallei
NCBI taxonomy Id: 272560
Other names: B. pseudomallei K96243, Burkholderia pseudomallei K96243, Burkholderia pseudomallei str. K96243, Burkholderia pseudomallei strain K96243
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