STRINGSTRING
BPSS1408 BPSS1408 sctD sctD BPSS1409 BPSS1409 BPSS1331 BPSS1331 BPSS1250 BPSS1250 BPSS1603 BPSS1603 nadE nadE sctC sctC
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
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colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
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[Homology]
Score
BPSS1408Hypothetical protein; Previously sequenced as Burkholderia pseudomallei hypothetical 8.8 kDa protein SWALL:Q93KY9 (EMBL:AF074878) (82 aa) fasta scores: E(): 7.3e-30, 100% id in 82 aa. (82 aa)    
Predicted Functional Partners:
sctD
Secretion-associated protein; Highly similar to the previously sequenced Burkholderia pseudomallei type III secretion-associated protein SctD SWALL:Q93KZ0 (EMBL:AF074878) (349 aa) fasta scores: E(): 1.7e-119, 98.28% id in 349 aa. Similar to Xanthomonas campestris HrpD5 protein or xcc1223 SWALL:Q8PBA0 (EMBL:AE012221) (315 aa) fasta scores: E(): 1e-09, 30.09% id in 329 aa.
       0.613
BPSS1409
Hypothetical protein; No significant database matches.
       0.504
BPSS1331
Putative phosphatase protein; Similar to Ralstonia solanacearum hypothetical transmembrane protein rsc2492 or rs01104 SWALL:Q8XWI2 (EMBL:AL646070) (502 aa) fasta scores: E(): 6.5e-123, 66.4% id in 503 aa, and to Wolbachia sp. wri phosphoprotein phosphatase SWALL:Q9RBM2 (EMBL:AJ012073) (428 aa) fasta scores: E(): 9e-19, 28.91% id in 415 aa. Note: Also similar to BPSS0403 (479 aa) fasta scores: E(): 4.7e-135, 87.866% identity in 478 aa overlap.
      
 0.499
BPSS1250
Similar to Mycoplana ramosa acetylpolyamine aminohydrolase AphA or Aph SWALL:APHA_MYCRA (SWALL:Q48935) (341 aa) fasta scores: E(): 1e-41, 37.46% id in 339 aa, and to Rhizobium loti acetylpolyamine aminohydrolase mll0103 SWALL:Q98NK3 (EMBL:AP002994) (342 aa) fasta scores: E(): 9.4e-59, 45.85% id in 338 aa, and to Pseudomonas aeruginosa acetylpolyamine aminohydrolase AphA or pa1409 SWALL:Q9I3T5 (EMBL:AE004570) (346 aa) fasta scores: E(): 1.5e-50, 43.64% id in 346 aa.
      
 0.497
BPSS1603
Putative secretion protein; Similar to Xanthomonas campestris hypersensitivity response secretion protein Hrpa1 precursor hrpa1 SWALL:HRA1_XANCV (SWALL:P80151) (607 aa) fasta scores: E(): 6.1e-11, 27.66% id in 459 aa, and to Yersinia enterocolitica yop proteins translocation protein C precursor YscC SWALL:YSCC_YEREN (SWALL:Q01244) (607 aa) fasta scores: E(): 3.4e-10, 30.98% id in 255 aa.
      
 0.495
nadE
Putative NH(3)-dependent NAD(+) synthetase; Catalyzes the ATP-dependent amidation of deamido-NAD to form NAD. Uses ammonia as a nitrogen source.
      
 0.410
sctC
Putative type III secretion system protein; Almost identical to the previously sequenced Burkholderia pseudomallei typeIII secretion-system associated protein SctC SWALL:Q93L02 (EMBL:AF074878) (588 aa) fasta scores: E(): 7.7e-207, 99.49% id in 588 aa. Similar to Ralstonia solanacearum hypersensitivity response secretion protein HrpA precursor HrpA or HrcC or rsp0874 or rs01645 SWALL:HRPA_RALSO (SWALL:Q52498) (568 aa) fasta scores: E(): 1.3e-84, 45.58% id in 577 aa, and to Burkholderia cepacia genomovar III BcsCC SWALL:Q8VP21 (EMBL:AY028431) (681 aa) fasta scores: E(): 2.9e-39, 37.1% id [...]
     
 0.401
Your Current Organism:
Burkholderia pseudomallei
NCBI taxonomy Id: 272560
Other names: B. pseudomallei K96243, Burkholderia pseudomallei K96243, Burkholderia pseudomallei str. K96243, Burkholderia pseudomallei strain K96243
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