STRINGSTRING
BPSS1492 BPSS1492 BPSS1491 BPSS1491 BPSS1498 BPSS1498 BPSS1503 BPSS1503 BPSS0962 BPSS0962 BPSS1262 BPSS1262 BPSL2406 BPSL2406 BPSL0995 BPSL0995 BPSS1502 BPSS1502 BPSS1509 BPSS1509
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
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Textmining
[Homology]
Score
BPSS1492Hypothetical protein; C-terminus is similar to Ralstonia solanacearum putative hemagglutinin-related protein rsp1620 or rs02177 SWALL:Q8XPL8 (EMBL:AL646086) (1309 aa) fasta scores: E(): 5.5e-12, 35.51% id in 428 aa. (516 aa)    
Predicted Functional Partners:
BPSS1491
Conserved hypothetical protein; Similar to Escherichia coli hypothetical glycosyltransferase TibC SWALL:Q9S4K6 (EMBL:AF131891) (406 aa) fasta scores: E(): 2.5e-60, 45.45% id in 363 aa, and to Escherichia coli plasmid pib6 orfa DNA SWALL:Q93K96 (EMBL:AJ304444) (391 aa) fasta scores: E(): 8e-56, 42% id in 369 aa. CDS is extended at the N-terminus in comparison to orthologues. Possible alternative out of frame downstream translational start site, therefore CDS could be pseudogene.
     
 0.902
BPSS1498
Similar to Yersinia pestis hypothetical protein ypo1470 or ypo0973 or y2700 or y3363 SWALL:Q8XGB3 (EMBL:AJ414148) (163 aa) fasta scores: E(): 0.0042, 24.84% id in 161 aa, and to Pseudomonas aeruginosa secreted protein Hcp (HcpB or pa5267) and (HcpC or pa0263) and (hc or pa1512) SWALL:Q9HI36 (EMBL:AE004939) (172 aa) fasta scores: E(): 0.013, 25.14% id in 175 aa.
      
 0.493
BPSS1503
Hypothetical protein; Similar over its N-terminal half to Pseudomonas aeruginosa hypothetical protein Pa5266 SWALL:Q9HTT3 (EMBL:AE004939) (691 aa) fasta scores: E(): 3.8e-32, 30.61% id in 503 aa, and to Pseudomonas aeruginosa hypothetical protein Pa0095 SWALL:Q9I737 (EMBL:AE004448) (741 aa) fasta scores: E(): 1.5e-31, 26.39% id in 629 aa.
      
 0.449
BPSS0962
Weakly similar to Serratia marcescens extracellular serine protease precursor SWALL:PRTT_SERMA (SWALL:P29805) (1045 aa) fasta scores: E(): 2.8e-32, 29.08% id in 1193 aa, and to Pseudomonas fluorescens serine protease homologue PspB SWALL:Q9ZNI5 (EMBL:AB015053) (1036 aa) fasta scores: E(): 8.4e-71, 36.9% id in 1176 aa. Autotransporter protein.
 
   
 0.441
BPSS1262
Putative exported protein; Similar to Ralstonia solanacearum hypothetical protein rsp1480 or rs03063 SWALL:Q8XQ06 (EMBL:AL646085) (246 aa) fasta scores: E(): 8.9e-39, 60.61% id in 259 aa, and to Xanthomonas axonopodis hypothetical protein Xac3752 SWALL:AAM38595 (EMBL:AE012024) (236 aa) fasta scores: E(): 7.8e-22, 46.61% id in 251 aa, and to Xanthomonas campestris hypothetical protein Xcc3710 SWALL:AAM42968 (EMBL:AE012492) (248 aa) fasta scores: E(): 1.2e-20, 45.07% id in 264 aa.
  
     0.418
BPSL2406
Putative membrane protein; Similar to Pseudomonas aeruginosa hypothetical protein pa4828 SWALL:Q9HUY2 (EMBL:AE004896) (151 aa) fasta scores: E(): 6.7e-09, 32.43% id in 148 aa, and to Synechocystis sp. hypothetical protein slr1186 SWALL:P74715 (EMBL:D90917) (148 aa) fasta scores: E(): 8.4e-07, 30.46% id in 151 aa.
  
     0.417
BPSL0995
Putative membrane protein; Similar to Ralstonia solanacearum putative signal peptide protein rsc2383 or rs06185 SWALL:Q8XWT7 (EMBL:AL646069) (1299 aa) fasta scores: E(): 3.6e-120, 42.81% id in 1371 aa, and to Neisseria meningitidis hypothetical protein nmb2135 SWALL:Q9JXB6 (EMBL:AE002561) (1405 aa) fasta scores: E(): 8.4e-29, 26.91% id in 1475 aa.
 
     0.411
BPSS1502
Putative Clp-type ATPase chaperone protein; Similar to Yersinia enterocolitica clp protease-associated protein ClpB SWALL:Q9F746 (EMBL:AF285784) (890 aa) fasta scores: E(): 7.8e-55, 41.06% id in 962 aa, and to Ralstonia solanacearum putative ClpA/B-type chaperone protein rsp0749 or rs01959 SWALL:Q8XRT2 (EMBL:AL646080) (905 aa) fasta scores: E(): 4.1e-66, 47.08% id in 962 aa; Belongs to the ClpA/ClpB family.
      
 0.410
BPSS1509
Hypothetical protein; Weakly similar to Salmonella typhi hypothetical protein Sty0304 SWALL:Q8Z966 (EMBL:AL627266) (447 aa) fasta scores: E(): 9.9e-06, 26.31% id in 475 aa.
      
 0.410
Your Current Organism:
Burkholderia pseudomallei
NCBI taxonomy Id: 272560
Other names: B. pseudomallei K96243, Burkholderia pseudomallei K96243, Burkholderia pseudomallei str. K96243, Burkholderia pseudomallei strain K96243
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