STRINGSTRING
BPSS1505 BPSS1505 BPSS1507 BPSS1507 BPSS1504 BPSS1504 BPSS1503 BPSS1503 BPSS1506 BPSS1506 BPSS0526 BPSS0526 BPSS0525 BPSS0525 BPSS0528 BPSS0528 BPSS0184 BPSS0184 BPSS0185 BPSS0185 BPSS1501 BPSS1501
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
BPSS1505Hypothetical protein; N-terminal region is weakly similar to Synechocystis sp. hypothetical protein SLR1819 SWALL:YI19_SYNY3 (SWALL:P73709) (331 aa) fasta scores: E(): 1.1e-15, 28.8% id in 309 aa. (354 aa)    
Predicted Functional Partners:
BPSS1507
Hypothetical protein; Weakly similar to Yersinia pestis hypothetical protein ypo0511a or y3662 SWALL:Q8ZII6 (EMBL:AJ414143) (121 aa) fasta scores: E(): 0.57, 28.84% id in 104 aa.
 
     0.870
BPSS1504
Putative exported protein; Similar over its C-terminal region to Chlorobium tepidum pentapeptide repeat family protein ct1045 SWALL:AAM72278 (EMBL:AE012867) (549 aa) fasta scores: E(): 1.5e-08, 32.65% id in 346 aa, and to Caulobacter crescentus pentapeptide repeat family protein cc0587 SWALL:Q9AAL0 (EMBL:AE005733) (371 aa) fasta scores: E(): 2.2e-08, 32.08% id in 321 aa.
 
    
0.809
BPSS1503
Hypothetical protein; Similar over its N-terminal half to Pseudomonas aeruginosa hypothetical protein Pa5266 SWALL:Q9HTT3 (EMBL:AE004939) (691 aa) fasta scores: E(): 3.8e-32, 30.61% id in 503 aa, and to Pseudomonas aeruginosa hypothetical protein Pa0095 SWALL:Q9I737 (EMBL:AE004448) (741 aa) fasta scores: E(): 1.5e-31, 26.39% id in 629 aa.
 
    0.780
BPSS1506
Putative exported protein; Weakly similar to Rhizobium loti hypothetical protein Mlr1970 SWALL:Q98JF2 (EMBL:AP002998) (211 aa) fasta scores: E(): 5.6, 29.57% id in 186 aa.
       0.780
BPSS0526
Hypothetical protein; Weakly similar to Chlorobium tepidum pentapeptide repeat family protein CT0918 SWALL:AAM72153 (EMBL:AE012857) (382 aa) fasta scores: E(): 0.06, 19.69% id in 325 aa.
  
     0.768
BPSS0525
Hypothetical protein; No significant database matches to the full length CDS. N-terminal region is similar to Yersinia pestis hypothetical protein ypo0508 SWALL:Q8ZIJ0 (EMBL:AJ414143) (190 aa) fasta scores: E(): 4.9e-08, 30.6% id in 183 aa. Internal region is similar to Yersinia pestis hypothetical protein ypo0509 SWALL:Q8ZII9 (EMBL:AJ414143) (540 aa) fasta scores: E(): 4.2e-21, 24.13% id in 547 aa. C-terminal region is similar to to Yersinia pestis hypothetical protein ypo0510 SWALL:Q8ZII8 (EMBL:AJ414143) (367 aa) fasta scores: E(): 0.00034, 18.62% id in 247 aa.
 
     0.766
BPSS0528
Similar to Yersinia pestis hypothetical protein ypo0511a SWALL:Q8ZII6 (EMBL:AJ414143) (121 aa) fasta scores: E(): 1.1e-09, 44.14% id in 111 aa. Similar to BPSS0185, 55.556% identity (56.075% ungapped) in 108 aa overlap.
 
     0.720
BPSS0184
Hypothetical protein; No significant database matches.
 
     0.717
BPSS0185
Similar to Yersinia pestis hypothetical protein ypo0511a or y3662 SWALL:Q8ZII6 (EMBL:AJ414143) (121 aa) fasta scores: E(): 2e-08, 40.17% id in 117 aa.
 
     0.709
BPSS1501
Similar to Pseudomonas aeruginosa hypothetical protein Pa1661 pa1661 SWALL:Q9I364 (EMBL:AE004594) (335 aa) fasta scores: E(): 9e-25, 31.56% id in 320 aa, and to Xanthomonas axonopodis hypothetical protein Xac4141 xac4141 SWALL:AAM38976 (EMBL:AE012064) (346 aa) fasta scores: E(): 3.3e-21, 31.76% id in 318 aa.
 
    0.692
Your Current Organism:
Burkholderia pseudomallei
NCBI taxonomy Id: 272560
Other names: B. pseudomallei K96243, Burkholderia pseudomallei K96243, Burkholderia pseudomallei str. K96243, Burkholderia pseudomallei strain K96243
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