STRINGSTRING
BPSS1508 BPSS1508 BPSS1510 BPSS1510 BPSS1509 BPSS1509 BPSS0102 BPSS0102 BPSS0168 BPSS0168 BPSS0531 BPSS0531 BPSS2105 BPSS2105 BPSS1511 BPSS1511 BPSS1507 BPSS1507 BPSS1499 BPSS1499 BPSS1496 BPSS1496
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
BPSS1508Hypothetical protein; Weakly similar to Ralstonia solanacearum putative transmembrane protein rsp0741 or rs01967 SWALL:Q8XRU0 (EMBL:AL646080) (193 aa) fasta scores: E(): 1.8, 25.52% id in 192 aa. (225 aa)    
Predicted Functional Partners:
BPSS1510
Putative membrane protein; Similar over its N-terminal region to Ralstonia solanacearum probable transmembrane protein rsp0739 or rs01969 SWALL:Q8XRU2 (EMBL:AL646080) (263 aa) fasta scores: E(): 1.3e-06, 34.83% id in 155 aa, and to Yersinia pestis putative membrane protein ypo1468 or ypo0975 or y2703 or y3366 SWALL:Q8XF18 (EMBL:AJ414148) (228 aa) fasta scores: E(): 0.047, 28.94% id in 190 aa.
  
  
 0.761
BPSS1509
Hypothetical protein; Weakly similar to Salmonella typhi hypothetical protein Sty0304 SWALL:Q8Z966 (EMBL:AL627266) (447 aa) fasta scores: E(): 9.9e-06, 26.31% id in 475 aa.
  
  
 0.735
BPSS0102
Similar to Salmonella typhi putative membrane protein sty0305 SWALL:Q8Z965 (EMBL:AL627266) (433 aa) fasta scores: E(): 1.8e-76, 55.78% id in 380 aa, and to Yersinia pestis putative OmpA-family membrane protein ypo0514 SWALL:Q8ZII3 (EMBL:AJ414143) (536 aa) fasta scores: E(): 3.2e-24, 30.93% id in 375 aa. Note: The N-terminal region of this CDS does not present similarities to any of the database matches. Also similar to BPSS0168 (422 aa) fasta scores: E(): 1.9e-61, 46.283% identity in 417 aa overlap.
  
  
 0.687
BPSS0168
OmpA family membrane protein; Similar to Salmonella typhimurium, and Salmonella enterica subsp. enterica serovar Typhimurium putative outer membrane protein, OmpA family stm0282 or SciP SWALL:Q93IS0 (EMBL:AE008707) (434 aa) fasta scores: E(): 6.7e-63, 48.33% id in 391 aa, and to Pseudomonas aeruginosa hypothetical protein pa0078 SWALL:Q9I754 (EMBL:AE004447) (449 aa) fasta scores: E(): 1.3e-22, 37.44% id in 414 aa. Note: Also similar to BPSS0102 (434 aa) fasta scores: E(): 2.1e-55, 46.283% identity in 417 aa overlap.
  
  
 0.687
BPSS0531
Similar to Yersinia pestis putative OmpA-family membrane protein ypo0514 SWALL:Q8ZII3 (EMBL:AJ414143) (536 aa) fasta scores: E(): 5.4e-45, 36.23% id in 505 aa. Internal region is weakly similar to Salmonella typhi putative membrane protein sty0305 SWALL:Q8Z965 (EMBL:AL627266) (433 aa) fasta scores: E(): 3.5e-13, 28.31% id in 445 aa. CDS is extended at the C-terminus in comparison to similar proteins.
  
  
 0.687
BPSS2105
Putative outer membrane porin protein; Similar to Rhizobium leguminosarum ImpK SWALL:Q93EC3 (EMBL:AF361470) (510 aa) fasta scores: E(): 5.2e-19, 33.03% id in 451 aa, and to Pseudomonas aeruginosa hypothetical protein Pa0078 SWALL:Q9I754 (EMBL:AE004447) (449 aa) fasta scores: E(): 5.4e-63, 47.12% id in 452 aa, and to Xanthomonas axonopodis hypothetical protein Xac4120 SWALL:Q8PF65 (EMBL:AE012061) (451 aa) fasta scores: E(): 1.2e-45, 40.29% id in 412 aa.
  
  
 0.687
BPSS1511
Putative membrane protein; Similar to Ralstonia solanacearum probable transmembrane protein rsp0763 or rs01945 SWALL:Q8XRR8 (EMBL:AL646080) (1313 aa) fasta scores: E(): 4.4e-17, 25.47% id in 1162 aa, and to Rhizobium leguminosarum ImpL SWALL:Q93EC2 (EMBL:AF361470) (1158 aa) fasta scores: E(): 3.1e-11, 24.82% id in 1003 aa.
  
  
 0.660
BPSS1507
Hypothetical protein; Weakly similar to Yersinia pestis hypothetical protein ypo0511a or y3662 SWALL:Q8ZII6 (EMBL:AJ414143) (121 aa) fasta scores: E(): 0.57, 28.84% id in 104 aa.
  
    0.524
BPSS1499
Similar to Pseudomonas aeruginosa hypothetical protein Pa1659 SWALL:Q9I366 (EMBL:AE004593) (135 aa) fasta scores: E(): 0.00057, 29.24% id in 106 aa, and to Yersinia pestis hypothetical protein Ypo1488 SWALL:Q8ZG31 (EMBL:AJ414148) (150 aa) fasta scores: E(): 0.00084, 30.76% id in 117 aa.
  
  
 0.522
BPSS1496
Similar to Vibrio cholerae hypothetical protein Vca0107 SWALL:Q9KN58 (EMBL:AE004353) (168 aa) fasta scores: E(): 2.3e-28, 55.9% id in 161 aa, and to Pseudomonas aeruginosa hypothetical protein Pa1657 SWALL:Q9I368 (EMBL:AE004593) (168 aa) fasta scores: E(): 3.5e-28, 51.55% id in 161 aa, and to Yersinia pestis hypothetical protein Ypo3707 SWALL:Q8ZAT3 (EMBL:AJ414158) (165 aa) fasta scores: E(): 2.6e-24, 47.59% id in 166 aa.
  
  
 0.511
Your Current Organism:
Burkholderia pseudomallei
NCBI taxonomy Id: 272560
Other names: B. pseudomallei K96243, Burkholderia pseudomallei K96243, Burkholderia pseudomallei str. K96243, Burkholderia pseudomallei strain K96243
Server load: low (30%) [HD]
STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.