STRINGSTRING
BPSS1519 BPSS1519 BPSL0347 BPSL0347 BPSS1168 BPSS1168 BPSL0508 BPSL0508 BPSS1427 BPSS1427 BPSL1905 BPSL1905 BPSL0600 BPSL0600 BPSS1313 BPSS1313 BPSL0487 BPSL0487 BPSS0786 BPSS0786 BPSL2487 BPSL2487
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
BPSS1519Similar to Burkholderia cepacia putative transposase for insertion sequence element IS402 SWALL:T402_BURCE (SWALL:P24536) (211 aa) fasta scores: E(): 1.4e-21, 55.63% id in 133 aa, and to Pseudomonas glumae transposase SWALL:Q9KVZ9 (EMBL:AB046460) (265 aa) fasta scores: E(): 7.9e-20, 52.71% id in 129 aa. (199 aa)    
Predicted Functional Partners:
BPSL0347
Putative insertion element protein; No significant database matches to the full length CDS. C-terminal region is similar to Burkholderia cepacia insertion element IS402 hypothetical protein SWALL:YI22_BURCE (SWALL:P24537) (147 aa) fasta scores: E(): 2.1e-17, 53.53% id in 99 aa, and Ralstonia solanacearum probable tis1421-transposase orfa protein SWALL:Q8XGS3 (EMBL:AL646082) (134 aa) fasta scores: E(): 1.5e-14, 51.04% id in 96 aa.
  
     0.773
BPSS1168
Putative acetyltransferase protein; Similar to Corynebacterium glutamicum hypothetical protein Cgl0569 SWALL:BAB97962 (EMBL:AP005275) (152 aa) fasta scores: E(): 4.7e-11, 34.69% id in 147 aa, and to Anabaena sp. hypothetical protein All0878 SWALL:Q8YYH2 (EMBL:AP003583) (272 aa) fasta scores: E(): 9e-11, 27.67% id in 271 aa, and to Streptomyces coelicolor putative acetyltransferase sco7150 or sc9a4.12C SWALL:Q9FBU1 (EMBL:AL939130) (278 aa) fasta scores: E(): 2.1e-07, 31.33% id in 233 aa.
  
     0.602
BPSL0508
Acetyltransferase (GNAT) family protein; No significant database matches to the full length CDS. C-terminus is similar to the C-terminal region of Anabaena sp. hypothetical protein ALL0878 SWALL:Q8YYH2 (EMBL:AP003583) (272 aa) fasta scores: E(): 2.4e-12, 30.18% id in 222 aa, and to Streptomyces coelicolor putative acetyltransferase sco7150 or sc9a4.12C SWALL:Q9FBU1 (EMBL:AL391072) (278 aa) fasta scores: E(): 2.4e-06, 30.83% id in 240 aa. Similar to BPSS1168, 69.888% identity (69.888% ungapped) in 269 aa overlap.
  
     0.542
BPSS1427
Conserved hypothetical protein; Similar to Streptomyces avermitilis putative NADPH-dependent fmn reductase SWALL:Q82GT3 (EMBL:AP005036) (203 aa) fasta scores: E(): 1e-28, 50.79% id in 189 aa.
  
     0.530
BPSL1905
Similar to Rhizobium loti transposase mlr9643 SWALL:Q98P22 (EMBL:AP003017) (127 aa) fasta scores: E(): 1.8e-11, 34.82% id in 112 aa, and to Agrobacterium tumefaciens hypothetical 15.7 kDa protein SWALL:Q44424 (EMBL:M55562) (137 aa) fasta scores: E(): 2e-11, 35.71% id in 112 aa.
  
     0.506
BPSL0600
Hypothetical protein; Poor database matches. Similar to Streptomyces violaceoruber granaticin biosynthetic gene cluster protein Gra-Orf12 SWALL:Q9ZA45 (EMBL:AJ011500) (751 aa) fasta scores: E(): 6.9e-09, 34.97% id in 729 aa.
  
     0.482
BPSS1313
Putative membrane protein; Similar to Streptomyces coelicolor putative membrane protein sco3332 or sce68.30C SWALL:Q9WX02 (EMBL:AL939116) (238 aa) fasta scores: E(): 2e-06, 29.44% id in 180 aa.
  
     0.481
BPSL0487
Hypothetical protein; Poor database matches. Similar to Erwinia chrysanthemi hypothetical protein VfmA SWALL:Q8RKD3 (EMBL:AJ438188) (275 aa) fasta scores: E(): 0.00013, 22.61% id in 252 aa.
  
     0.473
BPSS0786
Similar to Salmonella typhimurium, and Salmonella typhi D-ribose-binding periplasmic protein precursor RbsB SWALL:RBSB_SALTY (SWALL:P02926) (296 aa) fasta scores: E(): 3e-14, 27.09% id in 299 aa, and to Rhizobium loti ABC transporter, binding protein mll8567 SWALL:Q982N3 (EMBL:AP003014) (346 aa) fasta scores: E(): 2e-14, 28.82% id in 340 aa. CDS is extended at the C-terminus in comparison to orthologues.
  
     0.462
BPSL2487
Hypothetical protein; No significant database matches.
  
     0.454
Your Current Organism:
Burkholderia pseudomallei
NCBI taxonomy Id: 272560
Other names: B. pseudomallei K96243, Burkholderia pseudomallei K96243, Burkholderia pseudomallei str. K96243, Burkholderia pseudomallei strain K96243
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