STRINGSTRING
BPSS1520 BPSS1520 bsaN bsaN BPSS0435 BPSS0435 BPSS2185 BPSS2185 BPSS2198 BPSS2198 BPSL2782 BPSL2782 BPSS0436 BPSS0436 BPSS1521 BPSS1521 BPSS1020 BPSS1020 BPSL0060 BPSL0060 BPSS1889 BPSS1889
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
BPSS1520Weakly similar to Streptomyces coelicolor putative regulatory protein sco5017 or sck15.19 SWALL:Q9KY85 (EMBL:AL939122) (365 aa) fasta scores: E(): 4e-11, 28.89% id in 353 aa, and Pseudomonas aeruginosa probable transcriptional regulator pa4094 SWALL:Q9HWT4 (EMBL:AE004825) (319 aa) fasta scores: E(): 2e-09, 26.93% id in 323 aa. (353 aa)    
Predicted Functional Partners:
bsaN
Putative AraC-family regulator of type III secretion system; Similar to Salmonella typhimurium, and Salmonella typhi invasion protein InvF or stm2899 or sty3022 SWALL:INVF_SALTY (SWALL:P39437) (216 aa) fasta scores: E(): 3.5e-18, 36.01% id in 211 aa, and to Escherichia coli O157:H7 putative regulatory protein for type III secretion apparatus z4198 or ecs3734 SWALL:Q8X6D3 (EMBL:AE005515) (249 aa) fasta scores: E(): 4.4e-15, 36.84% id in 190 aa.
  
   
 0.621
BPSS0435
Putative AraC-family transcriptional regulator; C-terminus is similar to the C-terminal regions of Rhizobium loti probable transcriptional regulator mll0489 SWALL:Q98MP6 (EMBL:AP002995) (313 aa) fasta scores: E(): 5.7e-24, 36.29% id in 259 aa, and Pseudomonas aeruginosa probable transcriptional regulator pa2696 SWALL:Q9I0E6 (EMBL:AE004697) (297 aa) fasta scores: E(): 5.5e-20, 34.07% id in 226 aa.
  
     0.586
BPSS2185
Similar to Caulobacter crescentus pilus subunit protein PilA or cc2948 SWALL:Q9L720 (EMBL:AF229646) (59 aa) fasta scores: E(): 9.7e-08, 54% id in 50 aa, and to Ralstonia solanacearum putative pilin protein rsp1092 or rs02598 SWALL:Q8XQX6 (EMBL:AL646082) (58 aa) fasta scores: E(): 7.6e-06, 53.33% id in 45 aa. Note: Also similar to BPSS2186 (73 aa) fasta scores: E(): 3.3e-10, 70.213% identity in 47 aa overlap.
      
 0.497
BPSS2198
Putative membrane protein; Similar to Ralstonia solanacearum putative tight adherence TadC-related transmembrane protein rsc0650 or rs01554 SWALL:Q8Y1P0 (EMBL:AL646060) (315 aa) fasta scores: E(): 2.5e-53, 50.48% id in 311 aa, and to Agrobacterium tumefaciens components of type IV pilus CtpI or atu0216 or agr_c_371 SWALL:Q8UIS6 (EMBL:AE008995) (328 aa) fasta scores: E(): 4.2e-23, 31.56% id in 320 aa.
      
 0.497
BPSL2782
Putative AraC family transcriptional regulator; Similar to Mycobacterium smegmatis AdpA-like protein SWALL:Q9KX52 (EMBL:U20115) (308 aa) fasta scores: E(): 1.3e-11, 31.08% id in 222 aa, and to Caulobacter crescentus transcriptional regulator, AraC family cc3367 SWALL:Q9A339 (EMBL:AE005998) (324 aa) fasta scores: E(): 3.9e-09, 29.81% id in 322 aa, and to Streptomyces coelicolor putative transcriptional regulator sco2329 or scc53.20C SWALL:Q9KXJ1 (EMBL:AL357591) (320 aa) fasta scores: E(): 4.5e-09, 29.44% id in 326 aa.
  
   0.482
BPSS0436
Putative AraC-family regulatory protein; Similar to Rhizobium leguminosarum putative arac-like transcriptional regulator SWALL:Q93EA6 (EMBL:AF361470) (303 aa) fasta scores: E(): 1.6e-38, 38.92% id in 298 aa, and to Rhizobium leguminosarum putative arac-like transcriptional regulator SWALL:Q93EA7 (EMBL:AF361470) (306 aa) fasta scores: E(): 3.7e-14, 26.88% id in 305 aa.
  
     0.475
BPSS1521
Hypothetical protein; Weakly similar to Myxococcus xanthus putative sigma-54 dependent transcriptional activator 221_mxA SWALL:Q50874 (EMBL:U49156) (140 aa) fasta scores: E(): 3.3, 27.88% id in 104 aa.
      
 0.473
BPSS1020
Putative AraC family transcriptional regulator; Similar to Bacillus sp. GL1 protein Orf1 SWALL:Q9RC93 (EMBL:AB019619) (297 aa) fasta scores: E(): 8.1e-06, 27.88% id in 269 aa, to codon 279 and to Streptococcus pyogenes putative two-component response regulator Spy1556 SWALL:Q99YT2 (EMBL:AE006588) (246 aa) fasta scores: E(): 4.3e-07, 40.2% id in 97 aa, from codon 209 to codon 301 and to Citrobacter freundii arabinose operon regulatory protein araC SWALL:ARAC_CITFR (SWALL:P11765) (281 aa) fasta scores: E(): 6.3e-07, 38.23% id in 102 aa from codon 194 to codon 296.
  
     0.458
BPSL0060
Similar to Streptomyces coelicolor putative transcriptional regulator sco6746 or SC5f2A.29 SWALL:Q9X7Q2 (EMBL:AL049587) (325 aa) fasta scores: E(): 1.5e-15, 31.15% id in 337 aa, and to Xanthomonas axonopodis pv. citri str. 306 transcriptional regulator AraC family AdpA SWALL:AAM38899 (EMBL:AE012054) (336 aa) fasta scores: E(): 2.8e-14, 29.73% id in 333 aa.
  
   0.456
BPSS1889
Putative AraC-family transcriptional regulator; Similar to Ralstonia solanacearum probable transcription regulator protein rsc1832 or rs04267 SWALL:Q8XYC6 (EMBL:AL646067) (342 aa) fasta scores: E(): 1.7e-19, 33.62% id in 348 aa, and to Pseudomonas putida xylDLEGF operon transcriptional activator 1 XylS1 SWALL:XYS1_PSEPU (SWALL:Q04710) (321 aa) fasta scores: E(): 2.4e-14, 30.53% id in 298 aa. Possible alternative translational start sites.
  
     0.437
Your Current Organism:
Burkholderia pseudomallei
NCBI taxonomy Id: 272560
Other names: B. pseudomallei K96243, Burkholderia pseudomallei K96243, Burkholderia pseudomallei str. K96243, Burkholderia pseudomallei strain K96243
Server load: low (28%) [HD]
STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.