STRINGSTRING
BPSS1521 BPSS1521 BPSS1522 BPSS1522 bprA bprA bicP bicP BPSS1520 BPSS1520 bopA bopA BPSS1512 BPSS1512 BPSS1518 BPSS1518
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
BPSS1521Hypothetical protein; Weakly similar to Myxococcus xanthus putative sigma-54 dependent transcriptional activator 221_mxA SWALL:Q50874 (EMBL:U49156) (140 aa) fasta scores: E(): 3.3, 27.88% id in 104 aa. (147 aa)    
Predicted Functional Partners:
BPSS1522
Similar to Pseudomonas viridiflava response regulator GacA or RepB SWALL:GACA_PSEVI (SWALL:P95582) (214 aa) fasta scores: E(): 3.6e-17, 35.21% id in 213 aa, and to Yersinia pestis putative two-component response regulator ypo0255 or y0512 SWALL:Q8ZJ69 (EMBL:AJ414141) (210 aa) fasta scores: E(): 9e-22, 40.58% id in 207 aa.
     
 0.600
bprA
Similar to Ralstonia solanacearum putative HNS-like transcription regulator protein rsp0029 or rs02004 SWALL:Q8XTS5 (EMBL:AL646076) (95 aa) fasta scores: E(): 3.7e-14, 58.33% id in 96 aa, and to Citrobacter rodentium lee-encoded regulator SWALL:Q93FM7 (EMBL:AF311901) (129 aa) fasta scores: E(): 0.0036, 26% id in 100 aa.
      
 0.495
bicP
Putative chaperone; Similar to Salmonella typhimurium SicP SWALL:O85300 (EMBL:AF060857) (116 aa) fasta scores: E(): 7.2e-06, 25.89% id in 112 aa, and to Escherichia coli O111:H- Tir chaperone CesT SWALL:CEST_ECO11 (SWALL:O30999) (156 aa) fasta scores: E(): 0.38, 26.11% id in 134 aa.
     
 0.487
BPSS1520
Weakly similar to Streptomyces coelicolor putative regulatory protein sco5017 or sck15.19 SWALL:Q9KY85 (EMBL:AL939122) (365 aa) fasta scores: E(): 4e-11, 28.89% id in 353 aa, and Pseudomonas aeruginosa probable transcriptional regulator pa4094 SWALL:Q9HWT4 (EMBL:AE004825) (319 aa) fasta scores: E(): 2e-09, 26.93% id in 323 aa.
      
 0.473
bopA
Putative intercellular spread protein; Plays a role in mediating bacterial evasion from the host autophagic pathway; Belongs to the BopA/IcsB family.
     
 0.441
BPSS1512
Putative membrane protein; No significant database matches.
      
 0.410
BPSS1518
Putative transposase; Similar to N-terminal region of Xanthomonas oryzae putative transposase SWALL:Q93LQ4 (EMBL:AY035401) (344 aa) fasta scores: E(): 1.5e-07, 50% id in 66 aa.
      
 0.406
Your Current Organism:
Burkholderia pseudomallei
NCBI taxonomy Id: 272560
Other names: B. pseudomallei K96243, Burkholderia pseudomallei K96243, Burkholderia pseudomallei str. K96243, Burkholderia pseudomallei strain K96243
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