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BPSS1522 BPSS1522 BPSS1160 BPSS1160 BPSS1358 BPSS1358 BPSL1253 BPSL1253 BPSL1633 BPSL1633 BPSS2314 BPSS2314 BPSS1521 BPSS1521 bicP bicP BPSL2313 BPSL2313 BPSS2246 BPSS2246 BPSL2025 BPSL2025
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
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colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
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Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
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Textmining
[Homology]
Score
BPSS1522Similar to Pseudomonas viridiflava response regulator GacA or RepB SWALL:GACA_PSEVI (SWALL:P95582) (214 aa) fasta scores: E(): 3.6e-17, 35.21% id in 213 aa, and to Yersinia pestis putative two-component response regulator ypo0255 or y0512 SWALL:Q8ZJ69 (EMBL:AJ414141) (210 aa) fasta scores: E(): 9e-22, 40.58% id in 207 aa. (223 aa)    
Predicted Functional Partners:
BPSS1160
Similar to Bacillus subtilis sensor protein DegS or SacU SWALL:DEGS_BACSU (SWALL:P13799) (385 aa) from codon 330 fasta scores: E(): 5.1e-18, 29.48% id in 329 aa, and to Ralstonia solanacearum probable transmembrane two component system sensor kinase transcription regulator protein rsc0191 or rs00623 from codon 202 SWALL:Q8Y2Z0 (EMBL:AL646057) (458 aa) fasta scores: E(): 4.3e-49, 49.12% id in 458 aa. No transmembrane regions are predicted.
 
 
 0.857
BPSS1358
Putative sensor kinase protein; Similar to Erwinia chrysanthemi regulator HrpX SWALL:AAM46691 (EMBL:AF448202) (450 aa) fasta scores: E(): 8.4e-24, 28.46% id in 390 aa, and similar to the C-terminus of Pseudomonas aeruginosa probable two-component sensor pa0600 from codon 129 SWALL:Q9I5T8 (EMBL:AE004496) (797 aa) fasta scores: E(): 1.2e-36, 38.79% id in 366 aa, and to similar to the C-terminus of Ralstonia solanacearum probable transmembrane two component system sensor kinase transcription regulator protein rsc0191 or rs00623 from codon 254 SWALL:Q8Y2Z0 (EMBL:AL646057) (458 aa) fasta sc [...]
 
 
 0.856
BPSL1253
Putative integral membrane protein/sensor kinase; N-terminal region similar to Ralstonia solanacearum probable transmembrane protein rsp0132 or rs02988 SWALL:Q8XTH8 (EMBL:AL646076) (478 aa) fasta scores: E(): 1.6e-45, 48.28% id in 292 aa, and C-terminal region similar to Erwinia amylovora sensor kinase HrpX SWALL:Q9X3S8 (EMBL:AF083877) (494 aa) fasta scores: E(): 6.6e-24, 41.35% id in 237 aa.
 
 0.841
BPSL1633
Putative two-component system, response regulator; Similar to Escherichia coli, and Escherichia coli O157:H7 capsular synthesis regulator component B RcsB or b2217 or z3476 or ecs3106 SWALL:RCSB_ECOLI (SWALL:P14374) (216 aa) fasta scores: E(): 6.4e-17, 32.21% id in 208 aa, and to Pseudomonas aeruginosa probable two-component response regulator pa3714 SWALL:Q9HXS7 (EMBL:AE004790) (213 aa) fasta scores: E(): 1.2e-19, 36.15% id in 213 aa.
  
    0.777
BPSS2314
Probable gene remnant. Similar to C-terminal region of Ralstonia solanacearum probable ATP-binding ABC transporter protein rsc1176 or rs04549 SWALL:Q8Y068 (EMBL:AL646063) (551 aa) fasta scores: E(): 1.4e-13, 64.7% id in 85 aa, and to an internal region of Brucella abortus putative ABC transporter ATP-binding protein BaTn1953.ORF20 SWALL:Q8VQK7 (EMBL:AF454951) (334 aa) fasta scores: E(): 4e-10, 47.36% id in 114 aa. Similar to C-terminal regions BPSL2200, 51.064% identity (53.933% ungapped) in 94 aa overlap, and to BPSS2137, 51.579% identity (55.056% ungapped) in 95 aa overlap.
 
     0.761
BPSS1521
Hypothetical protein; Weakly similar to Myxococcus xanthus putative sigma-54 dependent transcriptional activator 221_mxA SWALL:Q50874 (EMBL:U49156) (140 aa) fasta scores: E(): 3.3, 27.88% id in 104 aa.
     
 0.600
bicP
Putative chaperone; Similar to Salmonella typhimurium SicP SWALL:O85300 (EMBL:AF060857) (116 aa) fasta scores: E(): 7.2e-06, 25.89% id in 112 aa, and to Escherichia coli O111:H- Tir chaperone CesT SWALL:CEST_ECO11 (SWALL:O30999) (156 aa) fasta scores: E(): 0.38, 26.11% id in 134 aa.
     
 0.563
BPSL2313
Putative nitrate/nitrite sensor protein; Similar to Escherichia coli, and Escherichia coli O157:H7 nitrate/nitrite sensor protein NarX or NarR SWALL:NARX_ECOLI (SWALL:P10956) (598 aa) fasta scores: E(): 3.7e-15, 28.96% id in 618 aa, and to Ralstonia solanacearum putative transmembrane nitrate/nitrite sensor kinase transcription regulator protein rsp0979 or rs02311 SWALL:Q8XR80 (EMBL:AL646082) (637 aa) fasta scores: E(): 3.3e-135, 58.93% id in 638 aa.
 
 
 0.537
BPSS2246
Putative sensor kinase/response regulator fusion protein; Similar to Anabaena sp. two-component hybrid sensor and regulator alr3442 SWALL:Q8YRK4 (EMBL:AP003593) (865 aa) fasta scores: E(): 1.3e-49, 30.58% id in 680 aa, and to Ralstonia solanacearum probable composite two-component regulatory rsp1676 or rs02235 SWALL:Q8XPG5 (EMBL:AL646086) (796 aa) fasta scores: E(): 1e-42, 32.65% id in 640 aa.
 
 
 
 0.523
BPSL2025
Putative two component regulatory system, sensor kinase; Similar to the C-terminal region of Escherichia coli sensor protein RcsC or b2218 SWALL:RCSC_ECOLI (SWALL:P14376) (949 aa) fasta scores: E(): 2e-37, 32.94% id in 513 aa, and of Salmonella typhi sensor protein RcsC or sty2496 SWALL:RCSC_SALTI (SWALL:Q56128) (948 aa) fasta scores: E(): 1.2e-35, 32.82% id in 521 aa.
 
 
 
 0.507
Your Current Organism:
Burkholderia pseudomallei
NCBI taxonomy Id: 272560
Other names: B. pseudomallei K96243, Burkholderia pseudomallei K96243, Burkholderia pseudomallei str. K96243, Burkholderia pseudomallei strain K96243
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