STRINGSTRING
BPSS1528 BPSS1528 bapC bapC bapB bapB BPSL1728 BPSL1728 BPSL2248 BPSL2248 tex tex bipD bipD bprA bprA
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
BPSS1528Hypothetical protein; No significant database matches. (880 aa)    
Predicted Functional Partners:
bapC
Similar to Salmonella typhi invasion protein IagB or sty3000 SWALL:IAGB_SALTI (SWALL:P43018) (160 aa) fasta scores: E(): 2e-11, 42.27% id in 123 aa, and to Burkholderia pseudomallei hypothetical 18.2 kDa protein SWALL:Q9ZF87 (EMBL:AF110185) (161 aa) fasta scores: E(): 5.2e-21, 47.68% id in 151 aa.
       0.773
bapB
Acyl carrier protein; Similar to Saccharopolyspora erythraea acyl carrier protein AcpP SWALL:ACP_SACER (SWALL:P11830) (95 aa) fasta scores: E(): 0.0043, 36.84% id in 76 aa, and to Thermotoga maritima acyl carrier protein AcpP or tm0662 SWALL:Q9WZD0 (EMBL:AE001739) (81 aa) fasta scores: E(): 9.7e-05, 31.88% id in 69 aa.
       0.773
BPSL1728
Putative exported porin; Similar to Bordetella pertussis outer membrane porin protein precursor SWALL:OMP_BORPE (SWALL:Q04064) (385 aa) fasta scores: E(): 2.1e-21, 30.44% id in 404 aa, and to Comamonas acidovorans outer membrane porin protein 32 precursor Omp32 SWALL:OM32_COMAC (SWALL:P24305) (351 aa) fasta scores: E(): 2.1e-09, 28.32% id in 399 aa.
      
 0.686
BPSL2248
Similar to Bacillus subtilis serine acetyltransferase CysE or CysA SWALL:CYSE_BACSU (SWALL:Q06750) (217 aa) fasta scores: E(): 4.3e-31, 57.89% id in 171 aa, and to Pseudomonas aeruginosa O-acetylserine synthase pa3816 SWALL:Q9HXI6 (EMBL:AE004799) (258 aa) fasta scores: E(): 1.7e-46, 56.92% id in 267 aa.
      
 0.686
tex
Putative transcription accessory protein; Similar to Bordetella pertussis Tex protein SWALL:TEX_BORPE (SWALL:Q45388) (791 aa) fasta scores: E(): 1.2e-179, 64.38% id in 775 aa, and to Ralstonia solanacearum putative transcription accessory protein rsc1623 or rs03986 SWALL:Q8XYY3 (EMBL:AL646065) (779 aa) fasta scores: E(): 0, 78.16% id in 783 aa.
      
 0.621
bipD
Putative membrane antigen; Required for invasion of epithelial cells, as well as for survival within host cells, escape from endocytic vesicles and subsequent actin-tail formation. Probably regulates the secretion of effectors BipB and BipC and their final integration into the target cell membrane; Belongs to the invasin protein D family.
       0.526
bprA
Similar to Ralstonia solanacearum putative HNS-like transcription regulator protein rsp0029 or rs02004 SWALL:Q8XTS5 (EMBL:AL646076) (95 aa) fasta scores: E(): 3.7e-14, 58.33% id in 96 aa, and to Citrobacter rodentium lee-encoded regulator SWALL:Q93FM7 (EMBL:AF311901) (129 aa) fasta scores: E(): 0.0036, 26% id in 100 aa.
       0.414
Your Current Organism:
Burkholderia pseudomallei
NCBI taxonomy Id: 272560
Other names: B. pseudomallei K96243, Burkholderia pseudomallei K96243, Burkholderia pseudomallei str. K96243, Burkholderia pseudomallei strain K96243
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