STRINGSTRING
bsaW bsaW bsaY bsaY bsaQ bsaQ bsaX bsaX bsaS bsaS BPSS1629 BPSS1629 sctT sctT bsaZ bsaZ bsaV bsaV bsaO bsaO BPSS1616 BPSS1616
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
bsaWSurface presentation of antigens protein; Similar to Salmonella typhimurium SpaP SWALL:Q57420 (EMBL:U29351) (224 aa) fasta scores: E(): 1.3e-49, 60.36% id in 222 aa, and to Yersinia enterocolitica YsaR SWALL:Q93NK7 (EMBL:AF369954) (224 aa) fasta scores: E(): 7.2e-50, 60.36% id in 222 aa. (226 aa)    
Predicted Functional Partners:
bsaY
Similar to Salmonella typhimurium surface presentation of antigens protein SpaR or stm2888 SWALL:SPAR_SALTY (SWALL:P40701) (263 aa) fasta scores: E(): 2.9e-32, 43.61% id in 227 aa, and to Yersinia enterocolitica YsaT SWALL:Q9KKH0 (EMBL:AF005744) (266 aa) fasta scores: E(): 3.3e-36, 46% id in 250 aa.
 
 
 0.987
bsaQ
Type III secretion system protein; Similar to Salmonella typhimurium, and Salmonella typhi invasion protein InvA or stm2896 or sty3019 SWALL:INVA_SALTY (SWALL:P35657) (685 aa) fasta scores: E(): 7.7e-135, 56.05% id in 694 aa, and to Shigella flexneri, and Shigella sonnei MxiA protein or VirH or cp0147 SWALL:MXIA_SHIFL (SWALL:P35533) (686 aa) fasta scores: E(): 5.3e-133, 55.57% id in 691 aa.
 
 
 0.977
bsaX
Surface presentation of antigens protein; Similar to Salmonella typhimurium, Salmonella typhi, Salmonella dublin, Salmonella enteritidis, Salmonella gallinarum, Salmonella senftenberg, and Salmonella typhisuis surface presentation of antigens protein SpaQ or stm2889 or sty3012 SWALL:SPAQ_SALTY (SWALL:P40704) (86 aa) fasta scores: E(): 3.7e-15, 54.21% id in 83 aa, and to Yersinia enterocolitica YsaS SWALL:Q93NK6 (EMBL:AF369954) (89 aa) fasta scores: E(): 7.6e-18, 65.06% id in 83 aa.
 
 
 0.972
bsaS
Surface presentation of antigens protein; Similar to Salmonella typhimurium, and Salmonella typhi probable ATP synthase SpaL or InvC or stm2894 or sty3017 SWALL:SPAL_SALTY (SWALL:P39444) (431 aa) fasta scores: E(): 9.6e-86, 59.15% id in 426 aa, and to Escherichia coli O157:H7 type III secretion apparatus protein z4194 or ecs3730 SWALL:Q8X6E2 (EMBL:AE005515) (439 aa) fasta scores: E(): 1.5e-83, 56.14% id in 431 aa.
 
  
 0.962
BPSS1629
Putative type III secretion protein; Similar to Burkholderia pseudomallei SctT SWALL:Q93L00 (EMBL:AF074878) (240 aa) fasta scores: E(): 4.4e-34, 49.78% id in 231 aa, and to Xanthomonas campestris HrpB8 protein HrcT or xcc1238 SWALL:AAM40536 (EMBL:AE012222) (276 aa) fasta scores: E(): 5.2e-30, 43.12% id in 269 aa. CDS is extended at the C-terminus in comparison to similar proteins.
 
 
 0.946
sctT
Similar to Xanthomonas campestris type III secretion associated protein Hrpb8 SWALL:Q56786 (EMBL:U33548) (276 aa) fasta scores: E(): 7.1e-46, 44.64% id in 271 aa. Identical to Burkholderia pseudomallei type III secretion-associated protein SctT SWALL:Q93L00 (EMBL:AF074878) (240 aa) fasta scores: E(): 6.7e-93, 100% id in 240 aa. Similar to Xanthomonas campestris HrpB8 protein HrcT or xcc1238 SWALL:AAM40536 (EMBL:AE012222) (276 aa) fasta scores: E(): 1.6e-46, 44.98% id in 269 aa.
 
 
 0.932
bsaZ
Surface presentation of antigens protein; Part of the bsa type III secretion system, is involved in the intracellular replication of invading bacteria inside the host cell. Probably necessary for the lysis of the vacuole membrane and escape into the host cell cytoplasm.
 
 
 0.932
bsaV
Surface presentation of antigens protein; Similar to Salmonella typhimurium SpaO SWALL:Q57524 (EMBL:U29358) (303 aa) fasta scores: E(): 0.045, 28.34% id in 314 aa.
 
  
 0.926
bsaO
Type III secretion system protein; Similar to Salmonella typhimurium InvG protein precursor InvG or stm2898 SWALL:INVG_SALTY (SWALL:P35672) (562 aa) fasta scores: E(): 1.8e-22, 44.5% id in 519 aa, and to Escherichia coli O157:H7 type III secretion apparatus protein z4197 or ecs3733 SWALL:Q8X6D6 (EMBL:AE005515) (567 aa) fasta scores: E(): 4e-36, 40.81% id in 517 aa.
 
 
 0.922
BPSS1616
Putative type III secretion protein; Similar to Burkholderia pseudomallei SctS SWALL:Q9ZGR0 (EMBL:AF074878) (87 aa) fasta scores: E(): 5.3e-16, 58.14% id in 86 aa, and to Xanthomonas oryzae pv. oryzicola HrcS SWALL:Q93MH8 (EMBL:AF404819) (86 aa) fasta scores: E(): 2.2e-15, 53.48% id in 86 aa.
 
 
 0.911
Your Current Organism:
Burkholderia pseudomallei
NCBI taxonomy Id: 272560
Other names: B. pseudomallei K96243, Burkholderia pseudomallei K96243, Burkholderia pseudomallei str. K96243, Burkholderia pseudomallei strain K96243
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