STRINGSTRING
BPSS1550 BPSS1550 BPSS1547 BPSS1547 bsaY bsaY bsaX bsaX bicA bicA bsaV bsaV bsaO bsaO sctS sctS sctT sctT BPSS1629 BPSS1629 BPSS1616 BPSS1616
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
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colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
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[Homology]
Score
BPSS1550Type III secretion system protein; Similar to Salmonella typhimurium lipoprotein PrgK precursor or stm2871 SWALL:PRGK_SALTY (SWALL:P41786) (252 aa) fasta scores: E(): 1.2e-25, 42.43% id in 238 aa, and to Shigella flexneri lipoprotein MxiJ precursor or cp0139 SWALL:MXIJ_SHIFL (SWALL:Q06081) (241 aa) fasta scores: E(): 1.1e-23, 47.89% id in 190 aa. (315 aa)    
Predicted Functional Partners:
BPSS1547
Type III secretion system protein; Similar to Salmonella typhimurium PrgH protein or stm2874 SWALL:PRGH_SALTY (SWALL:P41783) (392 aa) fasta scores: E(): 9.1e-12, 23.74% id in 417 aa, and to Salmonella typhi pathogenicity 1 island effector protein PrgH or sty2995 SWALL:Q8Z499 (EMBL:AL627276) (392 aa) fasta scores: E(): 7e-12, 24.46% id in 417 aa.
  
 
 0.953
bsaY
Similar to Salmonella typhimurium surface presentation of antigens protein SpaR or stm2888 SWALL:SPAR_SALTY (SWALL:P40701) (263 aa) fasta scores: E(): 2.9e-32, 43.61% id in 227 aa, and to Yersinia enterocolitica YsaT SWALL:Q9KKH0 (EMBL:AF005744) (266 aa) fasta scores: E(): 3.3e-36, 46% id in 250 aa.
 
 
 0.951
bsaX
Surface presentation of antigens protein; Similar to Salmonella typhimurium, Salmonella typhi, Salmonella dublin, Salmonella enteritidis, Salmonella gallinarum, Salmonella senftenberg, and Salmonella typhisuis surface presentation of antigens protein SpaQ or stm2889 or sty3012 SWALL:SPAQ_SALTY (SWALL:P40704) (86 aa) fasta scores: E(): 3.7e-15, 54.21% id in 83 aa, and to Yersinia enterocolitica YsaS SWALL:Q93NK6 (EMBL:AF369954) (89 aa) fasta scores: E(): 7.6e-18, 65.06% id in 83 aa.
 
 
 0.946
bicA
Surface presentation of antigens protein; Similar to Salmonella typhimurium, Salmonella typhi, and Salmonella dublin surface presentation of antigens protein SpaT or SicA or stm2886 or sty3009 SWALL:SPAT_SALTY (SWALL:P40703) (165 aa) fasta scores: E(): 4.2e-37, 61.9% id in 147 aa, and to Shigella flexneri, and Shigella dysenteriae IppI or IpgC or cp0129 SWALL:IPPI_SHIFL (SWALL:P18008) (155 aa) fasta scores: E(): 2.4e-33, 50.32% id in 153 aa.
 
  
 0.934
bsaV
Surface presentation of antigens protein; Similar to Salmonella typhimurium SpaO SWALL:Q57524 (EMBL:U29358) (303 aa) fasta scores: E(): 0.045, 28.34% id in 314 aa.
 
  
 0.923
bsaO
Type III secretion system protein; Similar to Salmonella typhimurium InvG protein precursor InvG or stm2898 SWALL:INVG_SALTY (SWALL:P35672) (562 aa) fasta scores: E(): 1.8e-22, 44.5% id in 519 aa, and to Escherichia coli O157:H7 type III secretion apparatus protein z4197 or ecs3733 SWALL:Q8X6D6 (EMBL:AE005515) (567 aa) fasta scores: E(): 4e-36, 40.81% id in 517 aa.
 
 
 0.923
sctS
Putative type III secretion-associated protein; Highly similar to the previously sequenced Burkholderia pseudomallei type III secretion-associated protein SctS SWALL:Q9ZGR0 (EMBL:AF074878) (87 aa) fasta scores: E(): 3.7e-31, 98.85% id in 87 aa. Similar to Ralstonia solanacearum HrpU protein or HrcS or rsp0859 or rs01630 SWALL:Q52487 (EMBL:AJ245811) (86 aa) fasta scores: E(): 3.4e-14, 58.53% id in 82 aa, and to Xanthomonas oryzae pv. oryzicola HrcS SWALL:Q93MH8 (EMBL:AF404819) (86 aa) fasta scores: E(): 2e-13, 52.32% id in 86 aa.
 
 
 0.913
sctT
Similar to Xanthomonas campestris type III secretion associated protein Hrpb8 SWALL:Q56786 (EMBL:U33548) (276 aa) fasta scores: E(): 7.1e-46, 44.64% id in 271 aa. Identical to Burkholderia pseudomallei type III secretion-associated protein SctT SWALL:Q93L00 (EMBL:AF074878) (240 aa) fasta scores: E(): 6.7e-93, 100% id in 240 aa. Similar to Xanthomonas campestris HrpB8 protein HrcT or xcc1238 SWALL:AAM40536 (EMBL:AE012222) (276 aa) fasta scores: E(): 1.6e-46, 44.98% id in 269 aa.
 
 
 0.910
BPSS1629
Putative type III secretion protein; Similar to Burkholderia pseudomallei SctT SWALL:Q93L00 (EMBL:AF074878) (240 aa) fasta scores: E(): 4.4e-34, 49.78% id in 231 aa, and to Xanthomonas campestris HrpB8 protein HrcT or xcc1238 SWALL:AAM40536 (EMBL:AE012222) (276 aa) fasta scores: E(): 5.2e-30, 43.12% id in 269 aa. CDS is extended at the C-terminus in comparison to similar proteins.
 
 
 0.908
BPSS1616
Putative type III secretion protein; Similar to Burkholderia pseudomallei SctS SWALL:Q9ZGR0 (EMBL:AF074878) (87 aa) fasta scores: E(): 5.3e-16, 58.14% id in 86 aa, and to Xanthomonas oryzae pv. oryzicola HrcS SWALL:Q93MH8 (EMBL:AF404819) (86 aa) fasta scores: E(): 2.2e-15, 53.48% id in 86 aa.
 
 
 0.907
Your Current Organism:
Burkholderia pseudomallei
NCBI taxonomy Id: 272560
Other names: B. pseudomallei K96243, Burkholderia pseudomallei K96243, Burkholderia pseudomallei str. K96243, Burkholderia pseudomallei strain K96243
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