STRINGSTRING
BPSS1552 BPSS1552 BPSS1551 BPSS1551 BPSS1550 BPSS1550 BPSS1549 BPSS1549 BPSS1547 BPSS1547 BPSS1548 BPSS1548
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
BPSS1552Type III secretion system protein; Similar to Salmonella typhimurium oxygen-regulated invasion protein OrgB or stm2869 SWALL:ORGB_SALTY (SWALL:P58654) (226 aa) fasta scores: E(): 2.9e-07, 27.4% id in 208 aa. (260 aa)    
Predicted Functional Partners:
BPSS1551
Type III secretion system protein; Similar to Salmonella typhimurium oxygen-regulated invasion protein OrgA or stm2870 SWALL:ORGA_SALTY (SWALL:P58653) (199 aa) fasta scores: E(): 4.2e-08, 31.87% id in 160 aa.
     
 0.810
BPSS1550
Type III secretion system protein; Similar to Salmonella typhimurium lipoprotein PrgK precursor or stm2871 SWALL:PRGK_SALTY (SWALL:P41786) (252 aa) fasta scores: E(): 1.2e-25, 42.43% id in 238 aa, and to Shigella flexneri lipoprotein MxiJ precursor or cp0139 SWALL:MXIJ_SHIFL (SWALL:Q06081) (241 aa) fasta scores: E(): 1.1e-23, 47.89% id in 190 aa.
     
 0.794
BPSS1549
Type III secretion system protein; Similar to Shigella flexneri, and Shigella sonnei MxiI protein or cp0138 SWALL:MXII_SHIFL (SWALL:Q06080) (97 aa) fasta scores: E(): 0.00022, 37.37% id in 99 aa, and to Salmonella typhimurium PrgJ protein or stm2872 SWALL:PRGJ_SALTY (SWALL:P41785) (101 aa) fasta scores: E(): 0.00075, 37.83% id in 74 aa.
       0.773
BPSS1547
Type III secretion system protein; Similar to Salmonella typhimurium PrgH protein or stm2874 SWALL:PRGH_SALTY (SWALL:P41783) (392 aa) fasta scores: E(): 9.1e-12, 23.74% id in 417 aa, and to Salmonella typhi pathogenicity 1 island effector protein PrgH or sty2995 SWALL:Q8Z499 (EMBL:AL627276) (392 aa) fasta scores: E(): 7e-12, 24.46% id in 417 aa.
  
  
 0.703
BPSS1548
Type III secretion system protein; Similar to Salmonella typhimurium PrgI protein or stm2873 SWALL:PRGI_SALTY (SWALL:P41784) (80 aa) fasta scores: E(): 4.2e-12, 55.26% id in 76 aa, and to Shigella flexneri, and Shigella sonnei MxiH protein or cp0137 SWALL:MXIH_SHIFL (SWALL:Q06079) (83 aa) fasta scores: E(): 3.1e-10, 49.35% id in 77 aa.
     
 0.698
Your Current Organism:
Burkholderia pseudomallei
NCBI taxonomy Id: 272560
Other names: B. pseudomallei K96243, Burkholderia pseudomallei K96243, Burkholderia pseudomallei str. K96243, Burkholderia pseudomallei strain K96243
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