STRINGSTRING
BPSS1553 BPSS1553 BPSS1554 BPSS1554 lysP lysP BPSL1105 BPSL1105 bsaN bsaN bicA bicA
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
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[Homology]
Score
BPSS1553Putative membrane protein; No significant similarity over the entire length of the protein. Similar to Yersinia enterocolitica orf1 SWALL:Q9KKJ0 (EMBL:AF005744) (161 aa) fasta scores: E(): 0.0001, 39.09% id in 110 aa, and to Salmonella typhi possible transmembrane regulator sty0377 SWALL:Q8Z922 (EMBL:AL627266) (247 aa) fasta scores: E(): 0.03, 30.2% id in 149 aa. (323 aa)    
Predicted Functional Partners:
BPSS1554
Hypothetical protein; No significant database matches.
     
 0.857
lysP
Similar to Escherichia coli lysine-specific permease LysP or CadR (WALL:P25737) (488 aa) fasta scores: E(): 5.6e-145, 75.05% id in 477 aa, and to Ralstonia solanacearum probable lysine-specific permease transmembrane protein rsc1758 or rs02945 SWALL:Q8XYK0 (EMBL:AL646066) (512 aa) fasta scores: E(): 1.5e-152, 78.79% id in 481 aa.
    
 
 0.606
BPSL1105
Putative TetR family regulatory protein; Similar to Ralstonia solanacearum probable transcription regulator protein rsc1007 or rs04285 SWALL:Q8Y0N6 (EMBL:AL646062) (239 aa) fasta scores: E(): 1.6e-45, 54.9% id in 204 aa, and to Agrobacterium tumefaciens transcriptional regulator, TetR family atu3115 or agr_l_1690gM SWALL:Q8UBA1 (EMBL:AE009242) (232 aa) fasta scores: E(): 8.1e-30, 48.12% id in 187 aa.
      
 0.497
bsaN
Putative AraC-family regulator of type III secretion system; Similar to Salmonella typhimurium, and Salmonella typhi invasion protein InvF or stm2899 or sty3022 SWALL:INVF_SALTY (SWALL:P39437) (216 aa) fasta scores: E(): 3.5e-18, 36.01% id in 211 aa, and to Escherichia coli O157:H7 putative regulatory protein for type III secretion apparatus z4198 or ecs3734 SWALL:Q8X6D3 (EMBL:AE005515) (249 aa) fasta scores: E(): 4.4e-15, 36.84% id in 190 aa.
      
 0.464
bicA
Surface presentation of antigens protein; Similar to Salmonella typhimurium, Salmonella typhi, and Salmonella dublin surface presentation of antigens protein SpaT or SicA or stm2886 or sty3009 SWALL:SPAT_SALTY (SWALL:P40703) (165 aa) fasta scores: E(): 4.2e-37, 61.9% id in 147 aa, and to Shigella flexneri, and Shigella dysenteriae IppI or IpgC or cp0129 SWALL:IPPI_SHIFL (SWALL:P18008) (155 aa) fasta scores: E(): 2.4e-33, 50.32% id in 153 aa.
      
 0.408
Your Current Organism:
Burkholderia pseudomallei
NCBI taxonomy Id: 272560
Other names: B. pseudomallei K96243, Burkholderia pseudomallei K96243, Burkholderia pseudomallei str. K96243, Burkholderia pseudomallei strain K96243
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