STRINGSTRING
BPSS1612 BPSS1612 BPSS1611 BPSS1611 BPSS1613 BPSS1613 BPSS1614 BPSS1614
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
BPSS1612Hypothetical protein; No significant database matches. (62 aa)    
Predicted Functional Partners:
BPSS1611
Conserved hypothetical protein; Similar to Xanthomonas campestris HpaB SWALL:Q9WWG3 (EMBL:AF056246) (162 aa) fasta scores: E(): 2e-29, 53.84% id in 156 aa, and to Burkholderia pseudomallei hypothetical 16.8 kDa protein SWALL:Q93KY8 (EMBL:AF074878) (151 aa) fasta scores: E(): 2e-41, 68% id in 150 aa.
       0.538
BPSS1613
Putative type III secretion protein; Similar to Burkholderia pseudomallei hypothetical 8.8 kDa protein SWALL:Q93KY9 (EMBL:AF074878) (82 aa) fasta scores: E(): 0.0014, 37.34% id in 83 aa, and to Xanthomonas axonopodis HrpD6 protein or xac0398 SWALL:Q8PQC8 (EMBL:AE011666) (80 aa) fasta scores: E(): 8.1, 25.67% id in 74 aa.
       0.468
BPSS1614
Putative type III secretion protein; Similar to Burkholderia pseudomallei SctD SWALL:Q93KZ0 (EMBL:AF074878) (349 aa) fasta scores: E(): 2.3e-32, 42.38% id in 335 aa, and to Xanthomonas campestris Hrpd5 SWALL:Q9WWG0 (EMBL:AF056246) (312 aa) fasta scores: E(): 1.2e-14, 32.51% id in 326 aa.
       0.424
Your Current Organism:
Burkholderia pseudomallei
NCBI taxonomy Id: 272560
Other names: B. pseudomallei K96243, Burkholderia pseudomallei K96243, Burkholderia pseudomallei str. K96243, Burkholderia pseudomallei strain K96243
Server load: low (24%) [HD]
STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.