STRINGSTRING
BPSS1615 BPSS1615 BPSS1616 BPSS1616 BPSS1617 BPSS1617 BPSS1618 BPSS1618 BPSS1619 BPSS1619 BPSS1620 BPSS1620 BPSS1621 BPSS1621 BPSS1614 BPSS1614 BPSS1613 BPSS1613
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
BPSS1615Putative type III secretion protein; Similar to Xanthomonas campestris HpaA protein or xcc1224 SWALL:AAM40522 (EMBL:AE012221) (271 aa) fasta scores: E(): 0.00061, 29.91% id in 234 aa, and to Burkholderia pseudomallei hypothetical 34.4 kDa protein SWALL:Q9ZGQ9 (EMBL:AF074878) (317 aa) fasta scores: E(): 2.3e-06, 30.14% id in 282 aa. (289 aa)    
Predicted Functional Partners:
BPSS1616
Putative type III secretion protein; Similar to Burkholderia pseudomallei SctS SWALL:Q9ZGR0 (EMBL:AF074878) (87 aa) fasta scores: E(): 5.3e-16, 58.14% id in 86 aa, and to Xanthomonas oryzae pv. oryzicola HrcS SWALL:Q93MH8 (EMBL:AF404819) (86 aa) fasta scores: E(): 2.2e-15, 53.48% id in 86 aa.
       0.773
BPSS1617
Putative type III secretion protein; Similar to Burkholderia pseudomallei SctR SWALL:Q9Z3E2 (EMBL:AF074878) (216 aa) fasta scores: E(): 1.5e-61, 73.95% id in 215 aa, and to Xanthomonas axonopodis hrcr protein HrcR or xac0402 SWALL:AAM35293 (EMBL:AE011666) (214 aa) fasta scores: E(): 2.2e-51, 61.21% id in 214 aa.
       0.645
BPSS1618
Putative type III secretion protein; Similar to Burkholderia pseudomallei SctQ SWALL:Q9ZGR1 (EMBL:AF074878) (310 aa) fasta scores: E(): 4.5e-10, 32.7% id in 373 aa, and to Xanthomonas campestris HrcQ SWALL:Q9WWF7 (EMBL:AF056246) (268 aa) fasta scores: E(): 6.3e-07, 30.38% id in 316 aa.
       0.645
BPSS1619
Putative type III secretion protein; Similar to Burkholderia pseudomallei hypothetical 24.8 kDa protein SWALL:Q9ZGR2 (EMBL:AF074878) (227 aa) fasta scores: E(): 4.2e-08, 35.13% id in 222 aa, and to Ralstonia solanacearum Hrp associated protein HpaP or rsp0862 or rs01633 SWALL:HPAP_RALSO (SWALL:P35651) (197 aa) fasta scores: E(): 3.8e-06, 33.51% id in 188 aa.
       0.572
BPSS1620
Putative type III secretion protein; Similar to Ralstonia solanacearum hypersensitivity response secretion protein HrcV or HrpO or rsp0863 or rs01634 SWALL:HRCV_RALSO (SWALL:P35656) (690 aa) fasta scores: E(): 4.6e-146, 60.49% id in 681 aa, and to Acidovorax avenae subsp. avenae putative HrpO SWALL:Q9F1J6 (EMBL:AB053454) (674 aa) fasta scores: E(): 6.3e-123, 55.78% id in 674 aa.
       0.572
BPSS1621
Putative type III secretion protein; Similar to Burkholderia pseudomallei SctU SWALL:Q93KZ2 (EMBL:AF074878) (351 aa) fasta scores: E(): 7.7e-60, 47.85% id in 349 aa, and to Ralstonia solanacearum hypersensitivity response secretion protein HrcU or HrpN or rsp0864 or rs01635 SWALL:HRCU_RALSO (SWALL:P35652) (357 aa) fasta scores: E(): 6.8e-54, 48.01% id in 352 aa.
       0.572
BPSS1614
Putative type III secretion protein; Similar to Burkholderia pseudomallei SctD SWALL:Q93KZ0 (EMBL:AF074878) (349 aa) fasta scores: E(): 2.3e-32, 42.38% id in 335 aa, and to Xanthomonas campestris Hrpd5 SWALL:Q9WWG0 (EMBL:AF056246) (312 aa) fasta scores: E(): 1.2e-14, 32.51% id in 326 aa.
       0.447
BPSS1613
Putative type III secretion protein; Similar to Burkholderia pseudomallei hypothetical 8.8 kDa protein SWALL:Q93KY9 (EMBL:AF074878) (82 aa) fasta scores: E(): 0.0014, 37.34% id in 83 aa, and to Xanthomonas axonopodis HrpD6 protein or xac0398 SWALL:Q8PQC8 (EMBL:AE011666) (80 aa) fasta scores: E(): 8.1, 25.67% id in 74 aa.
       0.406
Your Current Organism:
Burkholderia pseudomallei
NCBI taxonomy Id: 272560
Other names: B. pseudomallei K96243, Burkholderia pseudomallei K96243, Burkholderia pseudomallei str. K96243, Burkholderia pseudomallei strain K96243
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