STRINGSTRING
BPSS1617 BPSS1617 BPSS1629 BPSS1629 BPSS1616 BPSS1616 BPSS1620 BPSS1620 bsaY bsaY sctT sctT BPSS1621 BPSS1621 BPSS1624 BPSS1624 bsaX bsaX sctS sctS sctV sctV
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
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colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
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[Homology]
Score
BPSS1617Putative type III secretion protein; Similar to Burkholderia pseudomallei SctR SWALL:Q9Z3E2 (EMBL:AF074878) (216 aa) fasta scores: E(): 1.5e-61, 73.95% id in 215 aa, and to Xanthomonas axonopodis hrcr protein HrcR or xac0402 SWALL:AAM35293 (EMBL:AE011666) (214 aa) fasta scores: E(): 2.2e-51, 61.21% id in 214 aa. (216 aa)    
Predicted Functional Partners:
BPSS1629
Putative type III secretion protein; Similar to Burkholderia pseudomallei SctT SWALL:Q93L00 (EMBL:AF074878) (240 aa) fasta scores: E(): 4.4e-34, 49.78% id in 231 aa, and to Xanthomonas campestris HrpB8 protein HrcT or xcc1238 SWALL:AAM40536 (EMBL:AE012222) (276 aa) fasta scores: E(): 5.2e-30, 43.12% id in 269 aa. CDS is extended at the C-terminus in comparison to similar proteins.
 
 
 0.979
BPSS1616
Putative type III secretion protein; Similar to Burkholderia pseudomallei SctS SWALL:Q9ZGR0 (EMBL:AF074878) (87 aa) fasta scores: E(): 5.3e-16, 58.14% id in 86 aa, and to Xanthomonas oryzae pv. oryzicola HrcS SWALL:Q93MH8 (EMBL:AF404819) (86 aa) fasta scores: E(): 2.2e-15, 53.48% id in 86 aa.
 
 
 0.974
BPSS1620
Putative type III secretion protein; Similar to Ralstonia solanacearum hypersensitivity response secretion protein HrcV or HrpO or rsp0863 or rs01634 SWALL:HRCV_RALSO (SWALL:P35656) (690 aa) fasta scores: E(): 4.6e-146, 60.49% id in 681 aa, and to Acidovorax avenae subsp. avenae putative HrpO SWALL:Q9F1J6 (EMBL:AB053454) (674 aa) fasta scores: E(): 6.3e-123, 55.78% id in 674 aa.
 
 
 0.969
bsaY
Similar to Salmonella typhimurium surface presentation of antigens protein SpaR or stm2888 SWALL:SPAR_SALTY (SWALL:P40701) (263 aa) fasta scores: E(): 2.9e-32, 43.61% id in 227 aa, and to Yersinia enterocolitica YsaT SWALL:Q9KKH0 (EMBL:AF005744) (266 aa) fasta scores: E(): 3.3e-36, 46% id in 250 aa.
 
 
 0.956
sctT
Similar to Xanthomonas campestris type III secretion associated protein Hrpb8 SWALL:Q56786 (EMBL:U33548) (276 aa) fasta scores: E(): 7.1e-46, 44.64% id in 271 aa. Identical to Burkholderia pseudomallei type III secretion-associated protein SctT SWALL:Q93L00 (EMBL:AF074878) (240 aa) fasta scores: E(): 6.7e-93, 100% id in 240 aa. Similar to Xanthomonas campestris HrpB8 protein HrcT or xcc1238 SWALL:AAM40536 (EMBL:AE012222) (276 aa) fasta scores: E(): 1.6e-46, 44.98% id in 269 aa.
 
 
 0.951
BPSS1621
Putative type III secretion protein; Similar to Burkholderia pseudomallei SctU SWALL:Q93KZ2 (EMBL:AF074878) (351 aa) fasta scores: E(): 7.7e-60, 47.85% id in 349 aa, and to Ralstonia solanacearum hypersensitivity response secretion protein HrcU or HrpN or rsp0864 or rs01635 SWALL:HRCU_RALSO (SWALL:P35652) (357 aa) fasta scores: E(): 6.8e-54, 48.01% id in 352 aa.
 
 
 0.943
BPSS1624
Putative type III secretion protein; Similar to Burkholderia pseudomallei SctJ SWALL:Q93KZ5 (EMBL:AF074878) (274 aa) fasta scores: E(): 8.5e-50, 60.44% id in 273 aa, and to Ralstonia solanacearum Hrp conserved lipoprotein HrcJ or rsp0867 or rs01638 SWALL:Q52492 (EMBL:AJ245811) (269 aa) fasta scores: E(): 5.4e-42, 54.51% id in 266 aa.
 
 
 0.932
bsaX
Surface presentation of antigens protein; Similar to Salmonella typhimurium, Salmonella typhi, Salmonella dublin, Salmonella enteritidis, Salmonella gallinarum, Salmonella senftenberg, and Salmonella typhisuis surface presentation of antigens protein SpaQ or stm2889 or sty3012 SWALL:SPAQ_SALTY (SWALL:P40704) (86 aa) fasta scores: E(): 3.7e-15, 54.21% id in 83 aa, and to Yersinia enterocolitica YsaS SWALL:Q93NK6 (EMBL:AF369954) (89 aa) fasta scores: E(): 7.6e-18, 65.06% id in 83 aa.
 
 
 0.913
sctS
Putative type III secretion-associated protein; Highly similar to the previously sequenced Burkholderia pseudomallei type III secretion-associated protein SctS SWALL:Q9ZGR0 (EMBL:AF074878) (87 aa) fasta scores: E(): 3.7e-31, 98.85% id in 87 aa. Similar to Ralstonia solanacearum HrpU protein or HrcS or rsp0859 or rs01630 SWALL:Q52487 (EMBL:AJ245811) (86 aa) fasta scores: E(): 3.4e-14, 58.53% id in 82 aa, and to Xanthomonas oryzae pv. oryzicola HrcS SWALL:Q93MH8 (EMBL:AF404819) (86 aa) fasta scores: E(): 2e-13, 52.32% id in 86 aa.
 
 
 0.910
sctV
Putative type III secretion-associated protein; Almost identical to the previously sequenced Burkholderia pseudomallei type III secretion-associated protein SctV SWALL:Q93KZ1 (EMBL:AF074878) (705 aa) fasta scores: E(): 0, 99.71% id in 705 aa. Similar to Pseudomonas glumae putative HrpO SWALL:Q9F1J5 (EMBL:AB053455) (698 aa) fasta scores: E(): 7.7e-193, 77.69% id in 704 aa.
 
 
 0.909
Your Current Organism:
Burkholderia pseudomallei
NCBI taxonomy Id: 272560
Other names: B. pseudomallei K96243, Burkholderia pseudomallei K96243, Burkholderia pseudomallei str. K96243, Burkholderia pseudomallei strain K96243
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