STRINGSTRING
BPSS1687 BPSS1687 BPSS1683 BPSS1683 gca gca BPSS1689 BPSS1689 BPSS2351 BPSS2351 BPSS2110 BPSS2110 BPSS0065 BPSS0065 BPSS0158 BPSS0158 BPSS0186 BPSS0186 BPSS1685 BPSS1685 BPSS2136 BPSS2136
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
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[Homology]
Score
BPSS1687Putative membrane protein; Similar to Rhizobium loti hypothetical protein mlr1941 SWALL:Q98JH3 (EMBL:AP002998) (388 aa) fasta scores: E(): 3.8e-18, 35.77% id in 355 aa, and to Corynebacterium glutamicum predicted acyltransferases cgl2858 SWALL:BAC00251 (EMBL:AP005283) (356 aa) fasta scores: E(): 1.2e-11, 29.73% id in 380 aa. (352 aa)    
Predicted Functional Partners:
BPSS1683
Putative lipopolysaccharide biosynthesis-related membrane protein; Similar to Pseudomonas aeruginosa hypothetical protein pa5458 SWALL:Q9HTB2 (EMBL:AE004958) (380 aa) fasta scores: E(): 2.1e-11, 28.83% id in 385 aa, and to Rhizobium loti exopolysaccharide biosynthesis protein mlr6758 SWALL:Q988F9 (EMBL:AP003010) (395 aa) fasta scores: E(): 2.5e-09, 27.69% id in 343 aa.
  
     0.771
gca
GCP-mannose 4,6-dehydratase; Catalyzes the conversion of GDP-D-mannose to GDP-4-dehydro-6- deoxy-D-mannose.
     
 0.669
BPSS1689
Similar to Xylella fastidiosa UDP-glucose 4-epimerase xf0610 SWALL:Q9PFP7 (EMBL:AE003906) (295 aa) fasta scores: E(): 9.9e-53, 53.71% id in 296 aa, and to Xanthomonas campestris UDP-glucose 4-epimerase Rmd or xcc0608 SWALL:AAM39924 (EMBL:AE012159) (312 aa) fasta scores: E(): 1.3e-49, 50.65% id in 304 aa.
     
 0.669
BPSS2351
Similar to Paracoccus versutus replication protein Rep SWALL:Q8VS80 (EMBL:AF390867) (419 aa) fasta scores: E(): 1e-08, 26.81% id in 440 aa. C-terminal region is weakly similar to Coxiella burnetii hypothetical protein SWALL:Q9S6J8 (EMBL:AF131076) (433 aa) fasta scores: E(): 7.6e-08, 21.42% id in 448 aa.
  
     0.581
BPSS2110
Putative exported protein; Similar to Xylella fastidiosa hypothetical protein Xf1451 SWALL:Q9PDC8 (EMBL:AE003975) (636 aa) fasta scores: E(): 1.5e-39, 28.15% id in 618 aa, and to Xanthomonas axonopodis hypothetical protein Xac2007 SWALL:AAM36869 (EMBL:AE011836) (642 aa) fasta scores: E(): 4.2e-38, 27.45% id in 641 aa, and to Xanthomonas campestris hypothetical protein Xcc1973 SWALL:AAM41262 (EMBL:AE012301) (642 aa) fasta scores: E(): 1.5e-36, 27.07% id in 628 aa.
  
     0.527
BPSS0065
Putative exported protein; Weak similarity to the C-terminal region of Anabaena sp. hypothetical protein all2038 SWALL:Q8YVE0 (EMBL:AP003588) (743 aa) fasta scores: E(): 3.5e-14, 30.93% id in 682 aa.
  
   
 0.490
BPSS0158
Putative exported protein; Very low similarity to Anabaena sp. hypothetical protein all2038 SWALL:Q8YVE0 (EMBL:AP003588) (743 aa) fasta scores: E(): 1.3e-16, 30.72% id in 677 aa, and in its C-terminal region to Anabaena sp. hypothetical protein all3696 SWALL:Q8YQW5 (EMBL:AP003594) (379 aa) fasta scores: E(): 2.1e-06, 27.71% id in 368 aa.
  
   
 0.479
BPSS0186
Putative exported protein; Similar to Anabaena sp. hypothetical protein all2038 SWALL:Q8YVE0 (EMBL:AP003588) (743 aa) fasta scores: E(): 2.9e-14, 28.5% id in 684 aa, and in its C-terminal region to Anabaena sp. hypothetical protein all3696 SWALL:Q8YQW5 (EMBL:AP003594) (379 aa) fasta scores: E(): 3.3e-05, 28.8% id in 368 aa.
  
   
 0.456
BPSS1685
Putative lipopolysaccharide biosynthesis related membrane protein; Similar to Shigella flexneri putative O-antigen transporter RfbE or sf2100 SWALL:RFBE_SHIFL (SWALL:P37781) (418 aa) fasta scores: E(): 1.5e-24, 26.17% id in 424 aa, and to Salmonella typhi putative O-antigen transporter RfbX or sty2297 SWALL:RFBX_SALTI (SWALL:Q99191) (432 aa) fasta scores: E(): 2.6e-05, 21.56% id in 422 aa.
 
  
 0.436
BPSS2136
Family S43 non-peptidase homologue; Similar to Pseudomonas aeruginosa porin D precursor OprD or pa0958 SWALL:PORD_PSEAE (SWALL:P32722) (443 aa) fasta scores: E(): 2.2e-32, 35.58% id in 444 aa, and to Pseudomonas aeruginosa probable porin pa4501 SWALL:Q9HVS0 (EMBL:AE004864) (484 aa) fasta scores: E(): 2.8e-43, 33.66% id in 505 aa.
  
     0.408
Your Current Organism:
Burkholderia pseudomallei
NCBI taxonomy Id: 272560
Other names: B. pseudomallei K96243, Burkholderia pseudomallei K96243, Burkholderia pseudomallei str. K96243, Burkholderia pseudomallei strain K96243
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