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BPSS1712 BPSS1712 BPSS0190 BPSS0190 glt2 glt2 fadH fadH fadH-2 fadH-2 hoxN hoxN BPSL0698 BPSL0698 BPSL1862 BPSL1862 BPSS0844 BPSS0844
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
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colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
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[Homology]
Score
BPSS1712Similar to Yersinia pestis hypothetical protein ypo2976 or y1506 SWALL:Q8ZCK7 (EMBL:AJ414154) (415 aa) fasta scores: E(): 1.2e-95, 57.49% id in 407 aa, and to Escherichia coli hypothetical protein YbiU or b0821 SWALL:YBIU_ECOLI (SWALL:P75791) (421 aa) fasta scores: E(): 3.6e-70, 45.3% id in 415 aa. (414 aa)    
Predicted Functional Partners:
BPSS0190
Putative AraC-family transcriptional regulator (fragment); Pfam match to entry PF00165 HTH_AraC, Bacterial regulatory helix-turn-helix proteins, araC family, score 16.0, E-value 0.049.
 
 
    0.634
glt2
Similar to Ralstonia solanacearum probable glutamate synthase GltD or Rsc2964 or Rs01333 SWALL:Q8XV67 (EMBL:AL646072) (487 aa) fasta scores: E(): 2.8e-142, 77.66% id in 488 aa, and to Oryza sativa NADH dependent glutamate synthase precursor SWALL:Q9ZNX7 (EMBL:AB008845) (2166 aa) fasta scores: E(): 6.9e-74, 51.6% id in 500 aa.
  
  
 0.575
fadH
Similar to Escherichia coli 2,4-dienoyl-CoA reductase [NADPH] FadH or b3081 SWALL:FADH_ECOLI (SWALL:P42593) (671 aa) fasta scores: E(): 8.6e-165, 64.33% id in 673 aa, and to Streptomyces coelicolor 2,4-dienoyl-CoA reductase FadH or sco7066 or sc4g1.32 SWALL:Q9FC18 (EMBL:AL939130) (671 aa) fasta scores: E(): 1.8e-183, 71.32% id in 673 aa, and to Pseudomonas aeruginosa 2,4-dienoyl-Coareductase FadH1 or pa3092 SWALL:Q9HZB6 (EMBL:AE004733) (679 aa) fasta scores: E(): 6.1e-177, 68.64% id in 673 aa; possible alternative start site at codon 12.
  
  
 0.575
fadH-2
Similar to Escherichia coli 2,4-dienoyl-CoA reductase [NADPH] FadH or b3081 SWALL:FADH_ECOLI (SWALL:P42593) (671 aa) fasta scores: E(): 3e-151, 60.71% id in 672 aa, and to Pseudomonas aeruginosa 2,4-dienoyl-CoA reductase FadH1 or pa3092 SWALL:Q9HZB6 (EMBL:AE004733) (679 aa) fasta scores: E(): 4.9e-170, 65.73% id in 677 aa.
  
  
 0.575
hoxN
Similar to Alcaligenes eutrophus high-affinity nickel transport protein HoxN SWALL:HOXN_ALCEU (SWALL:P23516) (351 aa) fasta scores: E(): 4.3e-78, 58.11% id in 339 aa, and to Bradyrhizobium japonicum hydrogenase nickel incorporation protein HupN SWALL:HUPN_BRAJA (SWALL:Q45247) (381 aa) fasta scores: E(): 1e-61, 54.23% id in 319 aa; Belongs to the NiCoT transporter (TC 2.A.52) family.
  
     0.503
BPSL0698
Putative transmembrane transporter protein; Similar to Pseudomonas syringae copper resistance protein D copD SWALL:COPD_PSESF (SWALL:Q9KWM8) (311 aa) fasta scores: E(): 1.7e-06, 30.41% id in 263 aa, and to Ralstonia solanacearum probable copper resistance D transmembrane protein copD or rsp0659 or rs01790 SWALL:Q8XS22 (EMBL:AL646080) (309 aa) fasta scores: E(): 4.6e-08, 31.69% id in 306 aa, and to Xanthomonas campestris juglandis copper-resistance genes SWALL:Q56798 (EMBL:L19222) (307 aa) fasta scores: E(): 1.2e-06, 28.62% id in 283 aa.
  
     0.457
BPSL1862
Similar to Rhizobium meliloti hypothetical protein r02983 or smc03110 SWALL:YT83_RHIME (SWALL:P29953) (164 aa) fasta scores: E(): 3.3e-26, 51.85% id in 162 aa, and to Streptomyces coelicolor hypothetical protein sco2848 or sce20.22 SWALL:Q9RDA3 (EMBL:AL136058) (158 aa) fasta scores: E(): 1.1e-20, 50% id in 142 aa; Belongs to the UPF0303 family.
  
     0.414
BPSS0844
Similar to Pseudomonas aeruginosa hypothetical protein pa2095 SWALL:Q9I220 (EMBL:AE004637) (281 aa) fasta scores: E(): 3.2e-55, 57.66% id in 274 aa, and to Streptomyces clavuligerus methyltransferase CmcJ SWALL:O85727 (EMBL:AF073896) (310 aa) fasta scores: E(): 9e-17, 34.24% id in 292 aa.
  
     0.412
Your Current Organism:
Burkholderia pseudomallei
NCBI taxonomy Id: 272560
Other names: B. pseudomallei K96243, Burkholderia pseudomallei K96243, Burkholderia pseudomallei str. K96243, Burkholderia pseudomallei strain K96243
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