STRINGSTRING
BPSS1819 BPSS1819 BPSL1440 BPSL1440 BPSS1818 BPSS1818 BPSL2668 BPSL2668 BPSS0934 BPSS0934 BPSL0698 BPSL0698 BPSL1244 BPSL1244 gspL gspL BPSL2667 BPSL2667 BPSS2247 BPSS2247 BPSL1506 BPSL1506
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
BPSS1819Similar to Escherichia coli serine/threonine protein phosphatase 1 PphA or PrpA or b1838 SWALL:PRP1_ECOLI (SWALL:P55798) (218 aa) fasta scores: E(): 3e-17, 35.74% id in 221 aa, and to Salmonella typhimurium serine/threonine protein phosphatase PrpA or stm1853 SWALL:Q8ZNY9 (EMBL:AE008782) (216 aa) fasta scores: E(): 2.9e-13, 32.12% id in 221 aa. (244 aa)    
Predicted Functional Partners:
BPSL1440
Putative exported protein; Similar to Ralstonia solanacearum probable ankyrin repeat harboring signal peptide protein rsc1788 or rs04187 SWALL:Q8XYH0 (EMBL:AL646066) (291 aa) fasta scores: E(): 9.2e-29, 45.74% id in 223 aa, and to the N-terminal region of Oryza sativa putative ankyrin osjnba0040e01.26 SWALL:Q9AUW0 (EMBL:AC079887) (252 aa) fasta scores: E(): 3.7e-09, 33% id in 203 aa. Note: Most of the database matches in this CDS are to the N-terminal region of ankyrin-related eukaryotic proteins.
   
 
 0.607
BPSS1818
Putative membrane protein; Similar to Ralstonia solanacearum probable transmembrane protein rsp0410 or rs00867 SWALL:Q8XSQ7 (EMBL:AL646078) (224 aa) fasta scores: E(): 5e-45, 52.17% id in 207 aa, and to Deinococcus radiodurans hypothetical protein dr0351 SWALL:Q9RXG2 (EMBL:AE001895) (227 aa) fasta scores: E(): 6.6e-16, 31.05% id in 219 aa.
       0.536
BPSL2668
Putative glycosyl transferase; Weakly similar to Rhizobium loti probable glycosyl transferase mlr1944 SWALL:Q98JH2 (EMBL:AP002998) (368 aa) fasta scores: E(): 1.2e-09, 31.81% id in 220 aa and to Vibrio cholerae sugar transferase SWALL:O34234 (EMBL:Y07786) (337 aa) fasta scores: E(): 2e-09, 27.14% id in 210 aa.
  
     0.478
BPSS0934
Hypothetical protein; No significant database matches.
 
 
   0.452
BPSL0698
Putative transmembrane transporter protein; Similar to Pseudomonas syringae copper resistance protein D copD SWALL:COPD_PSESF (SWALL:Q9KWM8) (311 aa) fasta scores: E(): 1.7e-06, 30.41% id in 263 aa, and to Ralstonia solanacearum probable copper resistance D transmembrane protein copD or rsp0659 or rs01790 SWALL:Q8XS22 (EMBL:AL646080) (309 aa) fasta scores: E(): 4.6e-08, 31.69% id in 306 aa, and to Xanthomonas campestris juglandis copper-resistance genes SWALL:Q56798 (EMBL:L19222) (307 aa) fasta scores: E(): 1.2e-06, 28.62% id in 283 aa.
  
     0.451
BPSL1244
Putative membrane protein; Low similarity to Pseudomonas aeruginosa hypothetical protein pa4532 SWALL:Q9HVP5 (EMBL:AE004867) (229 aa) fasta scores: E(): 1.4e-09, 27.96% id in 211 aa, and to Vibrio cholerae hypothetical protein vc1870 SWALL:Q9KQX7 (EMBL:AE004263) (220 aa) fasta scores: E(): 3.7e-07, 25.52% id in 192 aa.
  
     0.447
gspL
Previously sequenced as Burkholderia pseudomallei general secretory pathway protein L GspL SWALL:Q9ZF77 (EMBL:AF110185) (444 aa) fasta scores: E(): 3.1e-79, 95.67% id in 462 aa. CDS is extended at the N-terminus in comparison to the previously sequenced protein. CDS also contains extra internal amino acid residues (229 to 246) relative to the previously sequenced protein. C-terminal region is similar to Pseudomonas aeruginosa general secretion pathway protein L XcpY SWALL:GSPL_PSEAE (SWALL:P25060) (382 aa) fasta scores: E(): 0.75, 24.33% id in 378 aa.
  
     0.420
BPSL2667
Similar to Escherichia coli lipopolysaccharide biosynthesis protein WzxC or Wzx or b2046 SWALL:WZXC_ECOLI (SWALL:P77377) (492 aa) fasta scores: E(): 0.012, 22.33% id in 412 aa, Ralstonia solanacearum putative lipopolysaccharide O-side chain biosynthesis transmembrane protein rsc0686 or rs01591 SWALL:Q8Y1K4 (EMBL:AL646060) (422 aa) fasta scores: E(): 1.6e-26, 28.7% id in 425 aa and to Salmonella typhimurium O-antigen translocase in LPS biosyntesis WzxE or stm3926 SWALL:Q9L6Q9 (EMBL:AE008883) (416 aa) fasta scores: E(): 5.7e-08, 24.39% id in 410 aa.
  
     0.416
BPSS2247
Hypothetical protein; No significant database matches.
  
     0.416
BPSL1506
Similar to Neisseria meningitidis hypothetical protein nma1628 SWALL:Q9JTU6 (EMBL:AL162756) (264 aa) fasta scores: E(): 6.1e-65, 61.21% id in 263 aa, and to Campylobacter jejuni hypothetical protein cj1132C SWALL:Q9PNG2 (EMBL:AL139077) (264 aa) fasta scores: E(): 1.3e-26, 35.56% id in 239 aa.
  
     0.402
Your Current Organism:
Burkholderia pseudomallei
NCBI taxonomy Id: 272560
Other names: B. pseudomallei K96243, Burkholderia pseudomallei K96243, Burkholderia pseudomallei str. K96243, Burkholderia pseudomallei strain K96243
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