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BPSS1851 BPSS1851 BPSS0326 BPSS0326
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
BPSS1851Similar to Rhizobium meliloti putative transmembrane transport protein ra1285 or sma2377 SWALL:Q92XG9 (EMBL:AE007314) (389 aa) fasta scores: E(): 2.8e-27, 32.34% id in 371 aa, and to Pseudomonas aeruginosa probable MFS transporter pa4136 SWALL:Q9HWP5 (EMBL:AE004830) (402 aa) fasta scores: E(): 1.3e-23, 31.65% id in 398 aa. (401 aa)    
Predicted Functional Partners:
BPSS0326
Putative transport-related membrane protein; Similar (appart from the internal repeat region) the plasmid-borne Streptomyces coelicolor methylenomycin A resistance protein Mmr or scp1.237C SWALL:MMR_STRCO (SWALL:P11545) (475 aa) fasta scores: E(): 7.2e-20, 32.75% id in 464 aa, and to Rhizobium loti probable transporter mll2542 SWALL:Q98I66 (EMBL:AP002999) (505 aa) fasta scores: E(): 8.6e-22, 32.99% id in 494 aa. The effect of the extra internal amino acids on the function of protein is not known.
  
     0.421
Your Current Organism:
Burkholderia pseudomallei
NCBI taxonomy Id: 272560
Other names: B. pseudomallei K96243, Burkholderia pseudomallei K96243, Burkholderia pseudomallei str. K96243, Burkholderia pseudomallei strain K96243
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