Export your current network:
... as a bitmap image:
file format is 'PNG': portable network graphic
... as a high-resolution bitmap:
same PNG format, but at higher resolution
... as a vector graphic:
SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc
... as short tabular text output:
TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)
... as tabular text output:
TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)
... as an XML summary:
structured XML interaction data, according to the 'PSI-MI' data standard
... protein node degrees:
node degree of proteins in your network (given the current score cut-off)
... network coordinates:
a flat-file format describing the coordinates and colors of nodes in the network
... protein sequences:
MFA: multi-fasta format - containing the aminoacid sequences in the network
... protein annotations:
a tab-delimited file describing the names, domains and descriptions of proteins in your network
... functional annotations:
a tab-delimited file containing all known functional terms of protiens in your network
Browse interactions in tabular form:
node1 | node2 | node1 annotation | node2 annotation | score |
BPSS0326 | BPSS1851 | Putative transport-related membrane protein; Similar (appart from the internal repeat region) the plasmid-borne Streptomyces coelicolor methylenomycin A resistance protein Mmr or scp1.237C SWALL:MMR_STRCO (SWALL:P11545) (475 aa) fasta scores: E(): 7.2e-20, 32.75% id in 464 aa, and to Rhizobium loti probable transporter mll2542 SWALL:Q98I66 (EMBL:AP002999) (505 aa) fasta scores: E(): 8.6e-22, 32.99% id in 494 aa. The effect of the extra internal amino acids on the function of protein is not known. | Similar to Rhizobium meliloti putative transmembrane transport protein ra1285 or sma2377 SWALL:Q92XG9 (EMBL:AE007314) (389 aa) fasta scores: E(): 2.8e-27, 32.34% id in 371 aa, and to Pseudomonas aeruginosa probable MFS transporter pa4136 SWALL:Q9HWP5 (EMBL:AE004830) (402 aa) fasta scores: E(): 1.3e-23, 31.65% id in 398 aa. | 0.421 |
BPSS1851 | BPSS0326 | Similar to Rhizobium meliloti putative transmembrane transport protein ra1285 or sma2377 SWALL:Q92XG9 (EMBL:AE007314) (389 aa) fasta scores: E(): 2.8e-27, 32.34% id in 371 aa, and to Pseudomonas aeruginosa probable MFS transporter pa4136 SWALL:Q9HWP5 (EMBL:AE004830) (402 aa) fasta scores: E(): 1.3e-23, 31.65% id in 398 aa. | Putative transport-related membrane protein; Similar (appart from the internal repeat region) the plasmid-borne Streptomyces coelicolor methylenomycin A resistance protein Mmr or scp1.237C SWALL:MMR_STRCO (SWALL:P11545) (475 aa) fasta scores: E(): 7.2e-20, 32.75% id in 464 aa, and to Rhizobium loti probable transporter mll2542 SWALL:Q98I66 (EMBL:AP002999) (505 aa) fasta scores: E(): 8.6e-22, 32.99% id in 494 aa. The effect of the extra internal amino acids on the function of protein is not known. | 0.421 |