STRINGSTRING
BPSS2063a BPSS2063a flgC flgC BPSS2062 BPSS2062 BPSS2063 BPSS2063 BPSS2064 BPSS2064
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
BPSS2063aHypothetical protein; No significant database matches. (61 aa)    
Predicted Functional Partners:
flgC
Flagellar basal-body rod protein; Similar to Salmonella typhimurium, and Salmonella typhi flagellar basal-body rod protein FlgC or FlaW SWALL:FLGC_SALTY (SWALL:P16438) (134 aa) fasta scores: E(): 1.6e-28, 65.94% id in 138 aa, and to Yersinia pestis flagellar basal-body rod protein ypo1800 SWALL:Q8ZFB7 (EMBL:AJ414150) (134 aa) fasta scores: E(): 5.8e-30, 68.84% id in 138 aa.
    
   0.585
BPSS2062
Putative transposase (fragment); Similar to the C-terminal region of Vibrio cholerae putative transposase SWALL:O68334 (EMBL:AF034434) (325 aa) fasta scores: E(): 1.3e-16, 42.96% id in 135 aa. Feature contains a frameshift after codon 68.
       0.458
BPSS2063
Hypothetical protein; No significant database matches to the full length CDS. C-terminus is similar to the C-terminal regions of Pseudomonas alcaligenes hypothetical protein SWALL:Q9F127 (EMBL:AF173167) (282 aa) fasta scores: E(): 2e-20, 45% id in 140 aa, and to Pseudomonas syringae hypothetical protein SWALL:Q9L6V8 (EMBL:AF232005) (507 aa) fasta scores: E(): 2.2e-19, 45.92% id in 135 aa.
       0.458
BPSS2064
Putative porin protein; Similar to Comamonas acidovorans outer membrane porin protein 32 precursor omp32 SWALL:OM32_COMAC (SWALL:P24305) (351 aa) fasta scores: E(): 6.7e-16, 28.64% id in 370 aa, and to Ralstonia solanacearum putative porin signal peptide protein rsc2760 or rs00094 SWALL:Q8XVR9 (EMBL:AL646071) (353 aa) fasta scores: E(): 5.9e-46, 42.12% id in 349 aa. Similar to BPSL1029, 65.565% identity (66.854% ungapped) in 363 aa overlap.
       0.403
Your Current Organism:
Burkholderia pseudomallei
NCBI taxonomy Id: 272560
Other names: B. pseudomallei K96243, Burkholderia pseudomallei K96243, Burkholderia pseudomallei str. K96243, Burkholderia pseudomallei strain K96243
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