STRINGSTRING
BPSS2109 BPSS2109 BPSS2103 BPSS2103 BPSS2105 BPSS2105 BPSS2104 BPSS2104 BPSS2097 BPSS2097 BPSS2107 BPSS2107 BPSS0531 BPSS0531 BPSS2101 BPSS2101 BPSS2106 BPSS2106 BPSS2095 BPSS2095 BPSS0532 BPSS0532
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
BPSS2109Putative FHA-family protein; Similar to Pseudomonas aeruginosa hypothetical protein Pa0081 SWALL:Q9I751 (EMBL:AE004447) (497 aa) fasta scores: E(): 3e-14, 28.71% id in 491 aa, and to Rhizobium loti hypothetical protein Mlr2345 SWALL:Q98IL9 (EMBL:AP002999) (486 aa) fasta scores: E(): 5.3e-11, 27.13% id in 468 aa, and to Xanthomonas axonopodis hypothetical protein Xac4122 SWALL:AAM38957 (EMBL:AE012061) (438 aa) fasta scores: E(): 8.7e-11, 25.54% id in 462 aa. (478 aa)    
Predicted Functional Partners:
BPSS2103
Hypothetical protein; Similar to N-terminus of Pseudomonas aeruginosa hypothetical protein Pa0076 SWALL:Q9I756 (EMBL:AE004446) (226 aa) fasta scores: E(): 1.6e-05, 36.17% id in 141 aa, and to N-terminus of Rhizobium leguminosarum ImpM SWALL:Q93EC1 (EMBL:AF361470) (457 aa) fasta scores: E(): 2.4e-05, 28.98% id in 207 aa.
 
  
 0.858
BPSS2105
Putative outer membrane porin protein; Similar to Rhizobium leguminosarum ImpK SWALL:Q93EC3 (EMBL:AF361470) (510 aa) fasta scores: E(): 5.2e-19, 33.03% id in 451 aa, and to Pseudomonas aeruginosa hypothetical protein Pa0078 SWALL:Q9I754 (EMBL:AE004447) (449 aa) fasta scores: E(): 5.4e-63, 47.12% id in 452 aa, and to Xanthomonas axonopodis hypothetical protein Xac4120 SWALL:Q8PF65 (EMBL:AE012061) (451 aa) fasta scores: E(): 1.2e-45, 40.29% id in 412 aa.
 
  
 0.852
BPSS2104
Putative membrane protein; Similar to Vibrio cholerae IcmF-related protein vca0120 or IcmF SWALL:Q9KN45 (EMBL:AE004353) (1181 aa) fasta scores: E(): 6.1e-46, 26.92% id in 1237 aa, and to Rhizobium loti hypothetical protein Mlr2360 SWALL:Q98IK4 (EMBL:AP002999) (1176 aa) fasta scores: E(): 3e-103, 33.08% id in 1209 aa, and to Xanthomonas axonopodis hypothetical protein Xac4119 SWALL:AAM38954 (EMBL:AE012061) (1176 aa) fasta scores: E(): 2.2e-77, 34.27% id in 1205 aa.
 
  
 0.815
BPSS2097
Similar to Xanthomonas axonopodis hypothetical protein xac4143 SWALL:AAM38978 (EMBL:AE012064) (167 aa) fasta scores: E(): 4.3e-18, 40.96% id in 166 aa, and to Pseudomonas aeruginosa hypothetical protein pa0087 SWALL:Q9I745 (EMBL:AE004447) (169 aa) fasta scores: E(): 7.9e-18, 44.93% id in 158 aa.
 
  
 0.814
BPSS2107
Putative exported protein; Similar to Salmonella typhimurium putative outer membrane lipoprotein stm0280 SWALL:Q8ZRL4 (EMBL:AE008707) (178 aa) fasta scores: E(): 2.5e-15, 37.95% id in 166 aa, and to Salmonella enterica subsp. enterica serovar Typhimurium SciN protein precursor SWALL:Q93IS2 (EMBL:AJ320483) (163 aa) fasta scores: E(): 3.1e-15, 38.96% id in 154 aa, and to Salmonella typhi probable lipoprotein sty0303 SWALL:Q8Z967 (EMBL:AL627266) (178 aa) fasta scores: E(): 3.4e-15, 40.37% id in 161 aa.
 
  
 0.812
BPSS0531
Similar to Yersinia pestis putative OmpA-family membrane protein ypo0514 SWALL:Q8ZII3 (EMBL:AJ414143) (536 aa) fasta scores: E(): 5.4e-45, 36.23% id in 505 aa. Internal region is weakly similar to Salmonella typhi putative membrane protein sty0305 SWALL:Q8Z965 (EMBL:AL627266) (433 aa) fasta scores: E(): 3.5e-13, 28.31% id in 445 aa. CDS is extended at the C-terminus in comparison to similar proteins.
 
  
 0.811
BPSS2101
Similar to Xanthomonas axonopodis hypothetical protein Xac4112 SWALL:AAM38947 (EMBL:AE012060) (347 aa) fasta scores: E(): 5.7e-23, 38.96% id in 367 aa, and to Pseudomonas aeruginosa hypothetical protein Pa0082 SWALL:Q9I750 (EMBL:AE004447) (344 aa) fasta scores: E(): 3.8e-18, 35.79% id in 366 aa, and to Salmonella typhimurium, and Salmonella enterica subsp. enterica serovar Typhimurium putative cytoplasmic protein stm0266 or sciA SWALL:Q93IT5 (EMBL:AE008707) (351 aa) fasta scores: E(): 1.4e-13, 31.94% id in 360 aa.
 
  
 0.811
BPSS2106
Similar to Pseudomonas aeruginosa hypothetical protein Pa0079 SWALL:Q9I753 (EMBL:AE004447) (444 aa) fasta scores: E(): 1.8e-58, 49.88% id in 451 aa, and to Yersinia pestis hypothetical protein ypo2934 or y1549 SWALL:Q8ZCP3 (EMBL:AJ414154) (449 aa) fasta scores: E(): 1.2e-54, 37% id in 454 aa, and to Xanthomonas axonopodis hypothetical protein Xac4121 SWALL:AAM38956 (EMBL:AE012061) (444 aa) fasta scores: E(): 1e-53, 46.44% id in 450 aa.
 
  
 0.809
BPSS2095
Similar to Xanthomonas axonopodis hypothetical protein xac4141 SWALL:AAM38976 (EMBL:AE012064) (346 aa) fasta scores: E(): 2.7e-18, 38.75% id in 400 aa, and to Pseudomonas aeruginosa hypothetical protein pa0089 SWALL:Q9I743 (EMBL:AE004447) (348 aa) fasta scores: E(): 6.4e-17, 41.93% id in 372 aa. Possible alternative translational start site.
 
  
 0.797
BPSS0532
Similar to Yersinia pestis putative membrane protein ypo0515 SWALL:Q8ZII2 (EMBL:AJ414143) (1150 aa) fasta scores: E(): 2.6e-128, 34.31% id in 1157 aa. C-terminal region is similar to Pseudomonas aeruginosa hypothetical protein pa0077 SWALL:Q9I755 (EMBL:AE004446) (1101 aa) fasta scores: E(): 6e-62, 26.85% id in 1132 aa.
 
  
 0.785
Your Current Organism:
Burkholderia pseudomallei
NCBI taxonomy Id: 272560
Other names: B. pseudomallei K96243, Burkholderia pseudomallei K96243, Burkholderia pseudomallei str. K96243, Burkholderia pseudomallei strain K96243
Server load: low (18%) [HD]
STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.