STRINGSTRING
BPSS2316 BPSS2316 BPSL3148 BPSL3148 BPSL2150 BPSL2150 BPSL3145 BPSL3145 BPSS2331 BPSS2331 BPSL3147 BPSL3147 BPSL0126 BPSL0126 BPSL0403 BPSL0403 BPSL0127 BPSL0127 bamD bamD zapD zapD
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
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Textmining
[Homology]
Score
BPSS2316Putative exported protein; Similar to Ralstonia solanacearum probable signal peptide protein rsc2958 or rs01342 SWALL:Q8XV73 (EMBL:AL646072) (211 aa) fasta scores: E(): 8.3e-26, 40.59% id in 202 aa, and to Neisseria meningitidis hypothetical protein nmb1963 SWALL:Q9JXN1 (EMBL:AE002544) (196 aa) fasta scores: E(): 2.4e-13, 30.3% id in 198 aa. (198 aa)    
Predicted Functional Partners:
BPSL3148
Putative membrane protein; Similar to Ralstonia solanacearum probable signal peptide protein Rsc2960 or Rs01338 SWALL:Q8XV71 (EMBL:AL646072) (173 aa) fasta scores: E(): 3.5e-36, 67.42% id in 175 aa, and to Neisseria meningitidis putative outer membrane transport protein NMA0487 or NMB1964 SWALL:Q9JR43 (EMBL:AL162753) (164 aa) fasta scores: E(): 3.4e-25, 58.89% id in 163 aa.
 
 
 0.820
BPSL2150
Putative outer membrane protein; Similar to Ralstonia solanacearum probable transmembrane protein rsc1413 or rs05279 SWALL:Q8XZI2 (EMBL:AL646064) (184 aa) fasta scores: E(): 6.5e-32, 71.25% id in 160 aa, and to Escherichia coli, Escherichia coli O6, and Escherichia coli O157:H7 histone-like protein HLP-1 precursor HlpA or Skp or OmpH or b0178 or c0215 or z0190 or ecs0180 SWALL:HLPA_ECOLI (SWALL:P11457) (161 aa) fasta scores: E(): 1.3e-05, 35.44% id in 158 aa; Belongs to the skp family.
  
   
 0.677
BPSL3145
Conserved hypothetical protein; Similar to Ralstonia solanacearum putative signal peptide protein Rsc2957 or Rs01343 SWALL:Q8XV74 (EMBL:AL646072) (115 aa) fasta scores: E(): 3.2e-09, 50.6% id in 83 aa, and to Pseudomonas putida toluene tolerance protein Ttg2E SWALL:Q9Z3Z8 (EMBL:AF106002) (100 aa) fasta scores: E(): 0.13, 31.25% id in 80 aa.
  
  
 0.621
BPSS2331
Putative lipoprotein; Similar to Ralstonia solanacearum probable lipoprotein precursor rsc2959 or rs01340 SWALL:Q8XV72 (EMBL:AL646072) (269 aa) fasta scores: E(): 2e-29, 48.99% id in 249 aa, and to Pseudomonas aeruginosa hypothetical protein pa2800 SWALL:Q9I043 (EMBL:AE004707) (234 aa) fasta scores: E(): 3.9e-20, 40.69% id in 231 aa. CDS is extended at the C-terminus in comparison to orthologues.
 
 
 
 0.591
BPSL3147
Putative lipoprotein; Similar to Ralstonia solanacearum probable lipoprotein precursor VacJ or Rsc2959 or Rs01340 SWALL:Q8XV72 (EMBL:AL646072) (269 aa) fasta scores: E(): 1.5e-30, 52.61% id in 249 aa, and to Shigella flexneri VacJ lipoprotein or Sf2424 SWALL:VACJ_SHIFL (SWALL:P43262) (251 aa) fasta scores: E(): 1.7e-15, 39.16% id in 240 aa.
 
 
 
 0.580
BPSL0126
Putative exported protein; Similar to Neisseria meningitidis hypothetical protein nma0161 SWALL:Q9JWZ1 (EMBL:AL162752) (199 aa) fasta scores: E(): 1.2e-17, 36.87% id in 179 aa, and to the N-terminal region of Ralstonia solanacearum probable proline rich signal peptide protein rsc0076 or rs02253 SWALL:Q8Y3A4 (EMBL:AL646057) (256 aa) fasta scores: E(): 3.4e-38, 56.14% id in 171 aa.
  
     0.571
BPSL0403
Mce related protein; Similar to Ralstonia solanacearum probable signal peptide protein rsc0315 or rs03282 SWALL:Q8Y2M0 (EMBL:AL646058) (330 aa) fasta scores: E(): 3.9e-31, 44.86% id in 321 aa, and to Pseudomonas aeruginosa hypothetical protein Pa3213 pa3213 SWALL:Q9HZ27 (EMBL:AE004744) (312 aa) fasta scores: E(): 5.7e-10, 25.9% id in 305 aa.
  
 
 0.559
BPSL0127
Sensor kinase protein; Two-component regulatory system family, sensor kinase protein. Similar to Azorhizobium caulinodans nitrogen regulation protein NtrY SWALL:NTRY_AZOCA (SWALL:Q04850) (771 aa) fasta scores: E(): 2.7e-25, 26.65% id in 814 aa, and to Ralstonia solanacearum probable two component sensor histidine kinase transcription regulator protein rsc0077 or rs02275 SWALL:Q8Y3A3 (EMBL:AL646057) (811 aa) fasta scores: E(): 6.7e-118, 58.61% id in 824 aa.
  
     0.547
bamD
Putative lipoprotein; Part of the outer membrane protein assembly complex, which is involved in assembly and insertion of beta-barrel proteins into the outer membrane.
  
   
 0.512
zapD
Conserved hypothetical protein; Cell division factor that enhances FtsZ-ring assembly. Directly interacts with FtsZ and promotes bundling of FtsZ protofilaments, with a reduction in FtsZ GTPase activity.
  
     0.505
Your Current Organism:
Burkholderia pseudomallei
NCBI taxonomy Id: 272560
Other names: B. pseudomallei K96243, Burkholderia pseudomallei K96243, Burkholderia pseudomallei str. K96243, Burkholderia pseudomallei strain K96243
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