Export your current network:
... as a bitmap image:
file format is 'PNG': portable network graphic
... as a high-resolution bitmap:
same PNG format, but at higher resolution
... as a vector graphic:
SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc
... as short tabular text output:
TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)
... as tabular text output:
TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)
... as an XML summary:
structured XML interaction data, according to the 'PSI-MI' data standard
... protein node degrees:
node degree of proteins in your network (given the current score cut-off)
... network coordinates:
a flat-file format describing the coordinates and colors of nodes in the network
... protein sequences:
MFA: multi-fasta format - containing the aminoacid sequences in the network
... protein annotations:
a tab-delimited file describing the names, domains and descriptions of proteins in your network
... functional annotations:
a tab-delimited file containing all known functional terms of protiens in your network
Browse interactions in tabular form:
node1 | node2 | node1 accession | node2 accession | node1 annotation | node2 annotation | score |
Psta_2006 | Psta_2007 | Psta_2006 | Psta_2007 | Hypothetical protein; KEGG: bte:BTH_II0547 exopolysaccharide tyrosine- protein kinase, putative. | SMART: AAA ATPase; KEGG: cps:CPS_5029 putative general secretion pathway protein A. | 0.401 |
Psta_2006 | trpF | Psta_2006 | Psta_2005 | Hypothetical protein; KEGG: bte:BTH_II0547 exopolysaccharide tyrosine- protein kinase, putative. | PFAM: N-(5'phosphoribosyl)anthranilate isomerase (PRAI); KEGG: gbm:Gbem_1960 N- (5'phosphoribosyl)anthranilate isomerase (PRAI); Belongs to the TrpF family. | 0.469 |
Psta_2007 | Psta_2006 | Psta_2007 | Psta_2006 | SMART: AAA ATPase; KEGG: cps:CPS_5029 putative general secretion pathway protein A. | Hypothetical protein; KEGG: bte:BTH_II0547 exopolysaccharide tyrosine- protein kinase, putative. | 0.401 |
trpF | Psta_2006 | Psta_2005 | Psta_2006 | PFAM: N-(5'phosphoribosyl)anthranilate isomerase (PRAI); KEGG: gbm:Gbem_1960 N- (5'phosphoribosyl)anthranilate isomerase (PRAI); Belongs to the TrpF family. | Hypothetical protein; KEGG: bte:BTH_II0547 exopolysaccharide tyrosine- protein kinase, putative. | 0.469 |