STRINGSTRING
Sbal_1967 Sbal_1967 Sbal_1966 Sbal_1966 Sbal_0888 Sbal_0888 kdkA kdkA Sbal_0761 Sbal_0761 lepA lepA Sbal_1969 Sbal_1969 Sbal_1968 Sbal_1968 Sbal_1970 Sbal_1970 Sbal_1971 Sbal_1971 Sbal_1972 Sbal_1972
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Sbal_1967KEGG: bte:BTH_II0849 BopA protein. (1348 aa)    
Predicted Functional Partners:
Sbal_1966
PFAM: Tir chaperone family protein; KEGG: stm:STM2879 secretion chaparone.
  
 
 0.977
Sbal_0888
PFAM: WD-40 repeat protein; KEGG: shn:Shewana3_0902 WD-40 repeat protein.
   
 0.741
kdkA
Lipopolysaccharide kinase; Catalyzes the ATP-dependent phosphorylation of the 3-deoxy-D- manno-octulosonic acid (Kdo) residue in Kdo-lipid IV(A) at the 4-OH position; Belongs to the protein kinase superfamily. KdkA/RfaP family.
    
 0.722
Sbal_0761
KEGG: son:SO0915 ankyrin domain protein.
   
 0.552
lepA
GTP-binding protein LepA; Required for accurate and efficient protein synthesis under certain stress conditions. May act as a fidelity factor of the translation reaction, by catalyzing a one-codon backward translocation of tRNAs on improperly translocated ribosomes. Back-translocation proceeds from a post-translocation (POST) complex to a pre- translocation (PRE) complex, thus giving elongation factor G a second chance to translocate the tRNAs correctly. Binds to ribosomes in a GTP- dependent manner.
    
  0.525
Sbal_1969
TIGRFAM: type III secretion protein, HrcV family; PFAM: type III secretion FHIPEP protein; KEGG: yps:YPTB0322 putative type-III secretion protein, EscV/SsaV/LcrD.
  
    0.507
Sbal_1968
Hypothetical protein; KEGG: sec:SC1434 secretion system apparatus SsaM.
       0.504
Sbal_1970
ATPase, FliI/YscN family; KEGG: cvi:CV2603 probable type III secretion system ATP synthase; TIGRFAM: ATPase, FliI/YscN family; PFAM: H+-transporting two-sector ATPase, alpha/beta subunit, central region; SMART: AAA ATPase.
  
    0.503
Sbal_1971
Hypothetical protein.
       0.462
Sbal_1972
Hypothetical protein.
       0.462
Your Current Organism:
Shewanella baltica
NCBI taxonomy Id: 325240
Other names: S. baltica OS155, Shewanella baltica OS155, Shewanella baltica str. OS155, Shewanella baltica strain OS155
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