Psta_0310 protein (Pirellula staleyi) - STRING interaction network

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:

Neighborhood

Gene Fusion

Cooccurrence

Coexpression

Experiments

Databases

Textmining

[Homology]

Score

Psta_0310

RNA polymerase, sigma-24 subunit, ECF subfamily; TIGRFAM: RNA polymerase sigma factor, sigma-70 family; PFAM: sigma-70 region 2 domain protein; KEGG: bvi:Bcep1808_1046 RNA polymerase sigma factor RpoE; Belongs to the sigma-70 factor family. ECF subfamily. (203 aa)

Predicted Functional Partners:

Psta_0311

0.786

Psta_2091

0.648

Psta_2884

0.593

Psta_0923

0.588

Psta_4536

0.571

Psta_2910

0.570

Psta_4125

0.570

Psta_4287

0.564

Psta_1117

0.557

Psta_2467

0.553

Your Current Organism:

Pirellula staleyi

NCBI taxonomy Id: 530564
Other names: P. staleyi DSM 6068, Pirellula staleyi ATCC 27377, Pirellula staleyi DSM 6068, Pirellula staleyi str. DSM 6068, Pirellula staleyi strain DSM 6068

Send network to Cytoscape

Export your current network:

... as a bitmap image:

download

file format is 'PNG': portable network graphic

... as a high-resolution bitmap:

download

same PNG format, but at higher resolution

... as a vector graphic:

download

SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc

... as short tabular text output:

download

TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)

... as tabular text output:

download

TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)

... as an XML summary:

download

structured XML interaction data, according to the 'PSI-MI' data standard

... protein node degrees:

download

node degree of proteins in your network (given the current score cut-off)

... network coordinates:

download

a flat-file format describing the coordinates and colors of nodes in the network

... protein sequences:

download

MFA: multi-fasta format - containing the aminoacid sequences in the network

... protein annotations:

download

a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

download

a tab-delimited file containing all known functional terms of protiens in your network

Browse interactions in tabular form:

node1	node2	node1 annotation	node2 annotation	score
Psta_0310	Psta_0311	RNA polymerase, sigma-24 subunit, ECF subfamily; TIGRFAM: RNA polymerase sigma factor, sigma-70 family; PFAM: sigma-70 region 2 domain protein; KEGG: bvi:Bcep1808_1046 RNA polymerase sigma factor RpoE; Belongs to the sigma-70 factor family. ECF subfamily.	PFAM: Serine/threonine protein kinase-related; tyrosine protein kinase; SMART: serine/threonine protein kinase; tyrosine protein kinase; KEGG: sus:Acid_3814 TPR repeat-containing serine/threonin protein kinase.	0.786
Psta_0310	Psta_0923	RNA polymerase, sigma-24 subunit, ECF subfamily; TIGRFAM: RNA polymerase sigma factor, sigma-70 family; PFAM: sigma-70 region 2 domain protein; KEGG: bvi:Bcep1808_1046 RNA polymerase sigma factor RpoE; Belongs to the sigma-70 factor family. ECF subfamily.	TIGRFAM: membrane-bound dehydrogenase domain protein; heme-binding protein; KEGG: sus:Acid_3123 putative heme-binding protein.	0.588
Psta_0310	Psta_1117	RNA polymerase, sigma-24 subunit, ECF subfamily; TIGRFAM: RNA polymerase sigma factor, sigma-70 family; PFAM: sigma-70 region 2 domain protein; KEGG: bvi:Bcep1808_1046 RNA polymerase sigma factor RpoE; Belongs to the sigma-70 factor family. ECF subfamily.	KEGG: bbt:BBta_0296 hypothetical protein.	0.557
Psta_0310	Psta_2091	RNA polymerase, sigma-24 subunit, ECF subfamily; TIGRFAM: RNA polymerase sigma factor, sigma-70 family; PFAM: sigma-70 region 2 domain protein; KEGG: bvi:Bcep1808_1046 RNA polymerase sigma factor RpoE; Belongs to the sigma-70 factor family. ECF subfamily.	PFAM: peptidase domain protein; KEGG: sus:Acid_5040 hypothetical protein.	0.648
Psta_0310	Psta_2467	RNA polymerase, sigma-24 subunit, ECF subfamily; TIGRFAM: RNA polymerase sigma factor, sigma-70 family; PFAM: sigma-70 region 2 domain protein; KEGG: bvi:Bcep1808_1046 RNA polymerase sigma factor RpoE; Belongs to the sigma-70 factor family. ECF subfamily.	Hypothetical protein; KEGG: ank:AnaeK_3798 FHA domain containing protein.	0.553
Psta_0310	Psta_2884	RNA polymerase, sigma-24 subunit, ECF subfamily; TIGRFAM: RNA polymerase sigma factor, sigma-70 family; PFAM: sigma-70 region 2 domain protein; KEGG: bvi:Bcep1808_1046 RNA polymerase sigma factor RpoE; Belongs to the sigma-70 factor family. ECF subfamily.	Hypothetical protein; KEGG: proteophosphoglycan 5.	0.593
Psta_0310	Psta_2910	RNA polymerase, sigma-24 subunit, ECF subfamily; TIGRFAM: RNA polymerase sigma factor, sigma-70 family; PFAM: sigma-70 region 2 domain protein; KEGG: bvi:Bcep1808_1046 RNA polymerase sigma factor RpoE; Belongs to the sigma-70 factor family. ECF subfamily.	Hypothetical protein; KEGG: cti:RALTA_B1983 squalene hopene cyclase.	0.570
Psta_0310	Psta_4125	RNA polymerase, sigma-24 subunit, ECF subfamily; TIGRFAM: RNA polymerase sigma factor, sigma-70 family; PFAM: sigma-70 region 2 domain protein; KEGG: bvi:Bcep1808_1046 RNA polymerase sigma factor RpoE; Belongs to the sigma-70 factor family. ECF subfamily.	KEGG: dal:Dalk_0344 cycloartenol synthase-like protein.	0.570
Psta_0310	Psta_4287	RNA polymerase, sigma-24 subunit, ECF subfamily; TIGRFAM: RNA polymerase sigma factor, sigma-70 family; PFAM: sigma-70 region 2 domain protein; KEGG: bvi:Bcep1808_1046 RNA polymerase sigma factor RpoE; Belongs to the sigma-70 factor family. ECF subfamily.	KEGG: scl:sce7370 hypothetical protein.	0.564
Psta_0310	Psta_4536	RNA polymerase, sigma-24 subunit, ECF subfamily; TIGRFAM: RNA polymerase sigma factor, sigma-70 family; PFAM: sigma-70 region 2 domain protein; KEGG: bvi:Bcep1808_1046 RNA polymerase sigma factor RpoE; Belongs to the sigma-70 factor family. ECF subfamily.	KEGG: sus:Acid_3072 hypothetical protein.	0.571
Psta_0311	Psta_0310	PFAM: Serine/threonine protein kinase-related; tyrosine protein kinase; SMART: serine/threonine protein kinase; tyrosine protein kinase; KEGG: sus:Acid_3814 TPR repeat-containing serine/threonin protein kinase.	RNA polymerase, sigma-24 subunit, ECF subfamily; TIGRFAM: RNA polymerase sigma factor, sigma-70 family; PFAM: sigma-70 region 2 domain protein; KEGG: bvi:Bcep1808_1046 RNA polymerase sigma factor RpoE; Belongs to the sigma-70 factor family. ECF subfamily.	0.786
Psta_0923	Psta_0310	TIGRFAM: membrane-bound dehydrogenase domain protein; heme-binding protein; KEGG: sus:Acid_3123 putative heme-binding protein.	RNA polymerase, sigma-24 subunit, ECF subfamily; TIGRFAM: RNA polymerase sigma factor, sigma-70 family; PFAM: sigma-70 region 2 domain protein; KEGG: bvi:Bcep1808_1046 RNA polymerase sigma factor RpoE; Belongs to the sigma-70 factor family. ECF subfamily.	0.588
Psta_0923	Psta_1117	TIGRFAM: membrane-bound dehydrogenase domain protein; heme-binding protein; KEGG: sus:Acid_3123 putative heme-binding protein.	KEGG: bbt:BBta_0296 hypothetical protein.	0.406
Psta_0923	Psta_2091	TIGRFAM: membrane-bound dehydrogenase domain protein; heme-binding protein; KEGG: sus:Acid_3123 putative heme-binding protein.	PFAM: peptidase domain protein; KEGG: sus:Acid_5040 hypothetical protein.	0.580
Psta_0923	Psta_4536	TIGRFAM: membrane-bound dehydrogenase domain protein; heme-binding protein; KEGG: sus:Acid_3123 putative heme-binding protein.	KEGG: sus:Acid_3072 hypothetical protein.	0.502
Psta_1117	Psta_0310	KEGG: bbt:BBta_0296 hypothetical protein.	RNA polymerase, sigma-24 subunit, ECF subfamily; TIGRFAM: RNA polymerase sigma factor, sigma-70 family; PFAM: sigma-70 region 2 domain protein; KEGG: bvi:Bcep1808_1046 RNA polymerase sigma factor RpoE; Belongs to the sigma-70 factor family. ECF subfamily.	0.557
Psta_1117	Psta_0923	KEGG: bbt:BBta_0296 hypothetical protein.	TIGRFAM: membrane-bound dehydrogenase domain protein; heme-binding protein; KEGG: sus:Acid_3123 putative heme-binding protein.	0.406
Psta_2091	Psta_0310	PFAM: peptidase domain protein; KEGG: sus:Acid_5040 hypothetical protein.	RNA polymerase, sigma-24 subunit, ECF subfamily; TIGRFAM: RNA polymerase sigma factor, sigma-70 family; PFAM: sigma-70 region 2 domain protein; KEGG: bvi:Bcep1808_1046 RNA polymerase sigma factor RpoE; Belongs to the sigma-70 factor family. ECF subfamily.	0.648
Psta_2091	Psta_0923	PFAM: peptidase domain protein; KEGG: sus:Acid_5040 hypothetical protein.	TIGRFAM: membrane-bound dehydrogenase domain protein; heme-binding protein; KEGG: sus:Acid_3123 putative heme-binding protein.	0.580
Psta_2091	Psta_2467	PFAM: peptidase domain protein; KEGG: sus:Acid_5040 hypothetical protein.	Hypothetical protein; KEGG: ank:AnaeK_3798 FHA domain containing protein.	0.771

page 1 of 3

Server load: low (16%) [HD]

Permalink

Network

Neighborhood

Experiments

Cooccurrence

Databases

Coexpression

Textmining

Fusion

© STRING Consortium 2023

Credits

Access

Info

About