Export your current network:
... as a vector graphic:
SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc
... as short tabular text output:
TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)
... as tabular text output:
TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)
... as an XML summary:
structured XML interaction data, according to the 'PSI-MI' data standard
... protein node degrees:
node degree of proteins in your network (given the current score cut-off)
... network coordinates:
a flat-file format describing the coordinates and colors of nodes in the network
... protein sequences:
MFA: multi-fasta format - containing the aminoacid sequences in the network
... protein annotations:
a tab-delimited file describing the names, domains and descriptions of proteins in your network
... functional annotations:
a tab-delimited file containing all known functional terms of protiens in your network
Browse interactions in tabular form:
| node1 | node2 | node1 accession | node2 accession | node1 annotation | node2 annotation | score |
| PA2824 | PA3271 | PA2824 | PA3271 | Probable sensor/response regulator hybrid; Product name confidence: Class 3 (Function proposed based on presence of conserved amino acid motif, structural feature or limited sequence similarity to an experimentally studied gene). | Probable two-component sensor; Product name confidence: Class 3 (Function proposed based on presence of conserved amino acid motif, structural feature or limited sequence similarity to an experimentally studied gene). | 0.868 |
| PA2824 | bfiR | PA2824 | PA4196 | Probable sensor/response regulator hybrid; Product name confidence: Class 3 (Function proposed based on presence of conserved amino acid motif, structural feature or limited sequence similarity to an experimentally studied gene). | BfiR; Product name confidence: Class 1: Function experimentally demonstrated in P. aeruginosa. | 0.845 |
| PA2824 | bfiS | PA2824 | PA4197 | Probable sensor/response regulator hybrid; Product name confidence: Class 3 (Function proposed based on presence of conserved amino acid motif, structural feature or limited sequence similarity to an experimentally studied gene). | BfiS; Product name confidence: Class 1: Function experimentally demonstrated in P. aeruginosa. | 0.907 |
| PA2824 | bfmR | PA2824 | PA4101 | Probable sensor/response regulator hybrid; Product name confidence: Class 3 (Function proposed based on presence of conserved amino acid motif, structural feature or limited sequence similarity to an experimentally studied gene). | BfmR; Product name confidence: Class 1: Function experimentally demonstrated in P. aeruginosa. | 0.558 |
| PA2824 | ercS | PA2824 | PA1976 | Probable sensor/response regulator hybrid; Product name confidence: Class 3 (Function proposed based on presence of conserved amino acid motif, structural feature or limited sequence similarity to an experimentally studied gene). | ErcS; Product name confidence: Class 1: Function experimentally demonstrated in P. aeruginosa. | 0.888 |
| PA2824 | ercS-2 | PA2824 | PA1992 | Probable sensor/response regulator hybrid; Product name confidence: Class 3 (Function proposed based on presence of conserved amino acid motif, structural feature or limited sequence similarity to an experimentally studied gene). | ErcS; Product name confidence: Class 1: Function experimentally demonstrated in P. aeruginosa. | 0.862 |
| PA2824 | gacS | PA2824 | PA0928 | Probable sensor/response regulator hybrid; Product name confidence: Class 3 (Function proposed based on presence of conserved amino acid motif, structural feature or limited sequence similarity to an experimentally studied gene). | Sensor/response regulator hybrid; Product name confidence: Class 2 (High similarity to functionally studied protein). | 0.851 |
| PA2824 | ladS | PA2824 | PA3974 | Probable sensor/response regulator hybrid; Product name confidence: Class 3 (Function proposed based on presence of conserved amino acid motif, structural feature or limited sequence similarity to an experimentally studied gene). | Lost Adherence Sensor, LadS; Product name confidence: Class 1 (Function experimentally demonstrated in P. aeruginosa). | 0.582 |
| PA2824 | mifR | PA2824 | PA5511 | Probable sensor/response regulator hybrid; Product name confidence: Class 3 (Function proposed based on presence of conserved amino acid motif, structural feature or limited sequence similarity to an experimentally studied gene). | MifR; Product name confidence: Class 1: Function experimentally demonstrated in P. aeruginosa. | 0.444 |
| PA2824 | retS | PA2824 | PA4856 | Probable sensor/response regulator hybrid; Product name confidence: Class 3 (Function proposed based on presence of conserved amino acid motif, structural feature or limited sequence similarity to an experimentally studied gene). | RetS (Regulator of Exopolysaccharide and Type III Secretion); Product name confidence: Class 1 (Function experimentally demonstrated in P. aeruginosa). | 0.762 |
| PA3271 | PA2824 | PA3271 | PA2824 | Probable two-component sensor; Product name confidence: Class 3 (Function proposed based on presence of conserved amino acid motif, structural feature or limited sequence similarity to an experimentally studied gene). | Probable sensor/response regulator hybrid; Product name confidence: Class 3 (Function proposed based on presence of conserved amino acid motif, structural feature or limited sequence similarity to an experimentally studied gene). | 0.868 |
| PA3271 | bfiR | PA3271 | PA4196 | Probable two-component sensor; Product name confidence: Class 3 (Function proposed based on presence of conserved amino acid motif, structural feature or limited sequence similarity to an experimentally studied gene). | BfiR; Product name confidence: Class 1: Function experimentally demonstrated in P. aeruginosa. | 0.530 |
| PA3271 | bfiS | PA3271 | PA4197 | Probable two-component sensor; Product name confidence: Class 3 (Function proposed based on presence of conserved amino acid motif, structural feature or limited sequence similarity to an experimentally studied gene). | BfiS; Product name confidence: Class 1: Function experimentally demonstrated in P. aeruginosa. | 0.819 |
| PA3271 | bfmR | PA3271 | PA4101 | Probable two-component sensor; Product name confidence: Class 3 (Function proposed based on presence of conserved amino acid motif, structural feature or limited sequence similarity to an experimentally studied gene). | BfmR; Product name confidence: Class 1: Function experimentally demonstrated in P. aeruginosa. | 0.716 |
| PA3271 | ercS | PA3271 | PA1976 | Probable two-component sensor; Product name confidence: Class 3 (Function proposed based on presence of conserved amino acid motif, structural feature or limited sequence similarity to an experimentally studied gene). | ErcS; Product name confidence: Class 1: Function experimentally demonstrated in P. aeruginosa. | 0.957 |
| PA3271 | ercS-2 | PA3271 | PA1992 | Probable two-component sensor; Product name confidence: Class 3 (Function proposed based on presence of conserved amino acid motif, structural feature or limited sequence similarity to an experimentally studied gene). | ErcS; Product name confidence: Class 1: Function experimentally demonstrated in P. aeruginosa. | 0.956 |
| PA3271 | gacS | PA3271 | PA0928 | Probable two-component sensor; Product name confidence: Class 3 (Function proposed based on presence of conserved amino acid motif, structural feature or limited sequence similarity to an experimentally studied gene). | Sensor/response regulator hybrid; Product name confidence: Class 2 (High similarity to functionally studied protein). | 0.960 |
| PA3271 | ladS | PA3271 | PA3974 | Probable two-component sensor; Product name confidence: Class 3 (Function proposed based on presence of conserved amino acid motif, structural feature or limited sequence similarity to an experimentally studied gene). | Lost Adherence Sensor, LadS; Product name confidence: Class 1 (Function experimentally demonstrated in P. aeruginosa). | 0.868 |
| PA3271 | mifR | PA3271 | PA5511 | Probable two-component sensor; Product name confidence: Class 3 (Function proposed based on presence of conserved amino acid motif, structural feature or limited sequence similarity to an experimentally studied gene). | MifR; Product name confidence: Class 1: Function experimentally demonstrated in P. aeruginosa. | 0.473 |
| PA3271 | retS | PA3271 | PA4856 | Probable two-component sensor; Product name confidence: Class 3 (Function proposed based on presence of conserved amino acid motif, structural feature or limited sequence similarity to an experimentally studied gene). | RetS (Regulator of Exopolysaccharide and Type III Secretion); Product name confidence: Class 1 (Function experimentally demonstrated in P. aeruginosa). | 0.917 |
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