Export your current network:
... as a bitmap image:
file format is 'PNG': portable network graphic
... as a high-resolution bitmap:
same PNG format, but at higher resolution
... as a vector graphic:
SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc
... as short tabular text output:
TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)
... as tabular text output:
TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)
... as an XML summary:
structured XML interaction data, according to the 'PSI-MI' data standard
... protein node degrees:
node degree of proteins in your network (given the current score cut-off)
... network coordinates:
a flat-file format describing the coordinates and colors of nodes in the network
... protein sequences:
MFA: multi-fasta format - containing the aminoacid sequences in the network
... protein annotations:
a tab-delimited file describing the names, domains and descriptions of proteins in your network
... functional annotations:
a tab-delimited file containing all known functional terms of protiens in your network
Browse interactions in tabular form:
node1 | node2 | node1 accession | node2 accession | node1 annotation | node2 annotation | score |
DVU_0005 | DVU_1842 | DVU_0005 | DVU_1842 | Lipoprotein, putative. | Lipoprotein, putative. | 0.671 |
DVU_0005 | DVU_2619 | DVU_0005 | DVU_2619 | Lipoprotein, putative. | Conserved hypothetical protein; Identified by similarity to OMNI:NTL03CP2311. | 0.665 |
DVU_0005 | alaS | DVU_0005 | DVU_1089 | Lipoprotein, putative. | alanyl-tRNA synthetase; Catalyzes the attachment of alanine to tRNA(Ala) in a two- step reaction: alanine is first activated by ATP to form Ala-AMP and then transferred to the acceptor end of tRNA(Ala). Also edits incorrectly charged Ser-tRNA(Ala) and Gly-tRNA(Ala) via its editing domain. | 0.758 |
DVU_0005 | dnaK | DVU_0005 | DVU_0811 | Lipoprotein, putative. | dnaK protein; Acts as a chaperone; Belongs to the heat shock protein 70 family. | 0.759 |
DVU_0005 | glnB-1 | DVU_0005 | DVU_1232 | Lipoprotein, putative. | Nitrogen regulatory protein P-II; Identified by similarity to SP:P21193; match to protein family HMM PF00543; Belongs to the P(II) protein family. | 0.721 |
DVU_0005 | gyrA | DVU_0005 | DVU_0004 | Lipoprotein, putative. | DNA gyrase, A subunit; A type II topoisomerase that negatively supercoils closed circular double-stranded (ds) DNA in an ATP-dependent manner to modulate DNA topology and maintain chromosomes in an underwound state. Negative supercoiling favors strand separation, and DNA replication, transcription, recombination and repair, all of which involve strand separation. Also able to catalyze the interconversion of other topological isomers of dsDNA rings, including catenanes and knotted rings. Type II topoisomerases break and join 2 DNA strands simultaneously in an ATP-dependent manner. | 0.806 |
DVU_0005 | htpG | DVU_0005 | DVU_2643 | Lipoprotein, putative. | Heat shock protein HtpG; Molecular chaperone. Has ATPase activity; Belongs to the heat shock protein 90 family. | 0.786 |
DVU_0005 | rpoA | DVU_0005 | DVU_1329 | Lipoprotein, putative. | DNA-directed RNA polymerase, alpha subunit; DNA-dependent RNA polymerase catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates. | 0.690 |
DVU_0005 | rpoB | DVU_0005 | DVU_2928 | Lipoprotein, putative. | DNA-directed RNA polymerase, beta subunit; DNA-dependent RNA polymerase catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates. | 0.651 |
DVU_0005 | rpoZ | DVU_0005 | DVU_3242 | Lipoprotein, putative. | DNA-directed RNA polymerase, omega subunit; Promotes RNA polymerase assembly. Latches the N- and C- terminal regions of the beta' subunit thereby facilitating its interaction with the beta and alpha subunits. | 0.641 |
DVU_1842 | DVU_0005 | DVU_1842 | DVU_0005 | Lipoprotein, putative. | Lipoprotein, putative. | 0.671 |
DVU_1842 | alaS | DVU_1842 | DVU_1089 | Lipoprotein, putative. | alanyl-tRNA synthetase; Catalyzes the attachment of alanine to tRNA(Ala) in a two- step reaction: alanine is first activated by ATP to form Ala-AMP and then transferred to the acceptor end of tRNA(Ala). Also edits incorrectly charged Ser-tRNA(Ala) and Gly-tRNA(Ala) via its editing domain. | 0.908 |
DVU_1842 | rpoA | DVU_1842 | DVU_1329 | Lipoprotein, putative. | DNA-directed RNA polymerase, alpha subunit; DNA-dependent RNA polymerase catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates. | 0.766 |
DVU_1842 | rpoB | DVU_1842 | DVU_2928 | Lipoprotein, putative. | DNA-directed RNA polymerase, beta subunit; DNA-dependent RNA polymerase catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates. | 0.718 |
DVU_1842 | rpoZ | DVU_1842 | DVU_3242 | Lipoprotein, putative. | DNA-directed RNA polymerase, omega subunit; Promotes RNA polymerase assembly. Latches the N- and C- terminal regions of the beta' subunit thereby facilitating its interaction with the beta and alpha subunits. | 0.720 |
DVU_2619 | DVU_0005 | DVU_2619 | DVU_0005 | Conserved hypothetical protein; Identified by similarity to OMNI:NTL03CP2311. | Lipoprotein, putative. | 0.665 |
DVU_2619 | alaS | DVU_2619 | DVU_1089 | Conserved hypothetical protein; Identified by similarity to OMNI:NTL03CP2311. | alanyl-tRNA synthetase; Catalyzes the attachment of alanine to tRNA(Ala) in a two- step reaction: alanine is first activated by ATP to form Ala-AMP and then transferred to the acceptor end of tRNA(Ala). Also edits incorrectly charged Ser-tRNA(Ala) and Gly-tRNA(Ala) via its editing domain. | 0.907 |
DVU_2619 | rpoA | DVU_2619 | DVU_1329 | Conserved hypothetical protein; Identified by similarity to OMNI:NTL03CP2311. | DNA-directed RNA polymerase, alpha subunit; DNA-dependent RNA polymerase catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates. | 0.762 |
DVU_2619 | rpoB | DVU_2619 | DVU_2928 | Conserved hypothetical protein; Identified by similarity to OMNI:NTL03CP2311. | DNA-directed RNA polymerase, beta subunit; DNA-dependent RNA polymerase catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates. | 0.713 |
DVU_2619 | rpoZ | DVU_2619 | DVU_3242 | Conserved hypothetical protein; Identified by similarity to OMNI:NTL03CP2311. | DNA-directed RNA polymerase, omega subunit; Promotes RNA polymerase assembly. Latches the N- and C- terminal regions of the beta' subunit thereby facilitating its interaction with the beta and alpha subunits. | 0.720 |
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