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DVU_0024 DVU_0024 DVU_2247 DVU_2247 fur-2 fur-2 DVU_2318 DVU_2318 DVU_0772 DVU_0772 DVU_0023 DVU_0023 DVU_1931 DVU_1931 poR poR DVU_3350 DVU_3350 DVU_2289 DVU_2289 DVU_0429 DVU_0429
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
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Experiments
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[Homology]
Score
DVU_0024Conserved hypothetical protein; Identified by similarity to OMNI:NTL01TT0251. (56 aa)    
Predicted Functional Partners:
DVU_2247
Antioxidant, AhpC/Tsa family; Identified by match to protein family HMM PF00578.
  
    0.864
fur-2
Transcriptional regulator, Fur family; Identified by match to protein family HMM PF01475; Belongs to the Fur family.
  
    0.860
DVU_2318
Rubrerythrin, putative; Identified by match to protein family HMM PF00301; match to protein family HMM PF02915.
  
    0.847
DVU_0772
Hypothetical protein; Identified by Glimmer2; putative.
   
    0.846
DVU_0023
Hypothetical protein; Identified by Glimmer2; putative.
       0.634
DVU_1931
Iron-sulfur cluster-binding protein; Identified by match to protein family HMM PF00037.
  
 
   0.553
poR
Pyruvate-ferredoxin oxidoreductase; Identified by similarity to GP:1770208; match to protein family HMM PF00037; match to protein family HMM PF01558; match to protein family HMM PF01855.
   
   0.517
DVU_3350
Iron-sulfur cluster-binding protein; Identified by match to protein family HMM PF00037.
   
   0.504
DVU_2289
Hydrogenase, CooX subunit, putative; Identified by match to protein family HMM PF00037.
   
   0.499
DVU_0429
Ech hydrogenase, subunit EchF, putative; Identified by similarity to GP:3005972; match to protein family HMM PF00037.
    
   0.495
Your Current Organism:
Desulfovibrio vulgaris Hildenborough
NCBI taxonomy Id: 882
Other names: D. vulgaris str. Hildenborough, Desulfovibrio vulgaris (STRAIN HILDENBOROUGH), Desulfovibrio vulgaris ATCC 29579, Desulfovibrio vulgaris str. Hildenborough, Desulfovibrio vulgaris subsp. vulgaris (strain Hildenborough), Desulfovibrio vulgaris subsp. vulgaris ATCC 29579, Desulfovibrio vulgaris subsp. vulgaris str. Hildenborough
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