STRINGSTRING
DVU_0069 DVU_0069 DVU_0070 DVU_0070 DVU_1435 DVU_1435 DVU_2032 DVU_2032 DVU_0760 DVU_0760 DVU_0068 DVU_0068 DVU_1060 DVU_1060 DVU_2763 DVU_2763 DVU_1339 DVU_1339 DVU_2619 DVU_2619
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
DVU_0069Hypothetical protein; Identified by Glimmer2; putative. (1467 aa)    
Predicted Functional Partners:
DVU_0070
Identified by match to protein family HMM PF00149.
 
 
 0.962
DVU_1435
Membrane protein, putative; Identified by similarity to OMNI:NTL03PA01784.
  
    0.598
DVU_2032
ERF family protein; Identified by match to protein family HMM PF04404.
  
     0.588
DVU_0760
Hypothetical protein; Identified by Glimmer2; putative.
  
    0.501
DVU_0068
Conserved hypothetical protein; Identified by similarity to OMNI:NTL01PF0547.
  
    0.478
DVU_1060
Glycosyl transferase, group 1 family protein; Identified by match to protein family HMM PF00534.
  
    0.457
DVU_2763
TPR/GGDEF domain protein; Identified by match to protein family HMM PF00515; match to protein family HMM PF00990; match to protein family HMM TIGR00254.
  
    0.445
DVU_1339
Lipoprotein, putative.
  
    0.411
DVU_2619
Conserved hypothetical protein; Identified by similarity to OMNI:NTL03CP2311.
  
    0.406
Your Current Organism:
Desulfovibrio vulgaris Hildenborough
NCBI taxonomy Id: 882
Other names: D. vulgaris str. Hildenborough, Desulfovibrio vulgaris (STRAIN HILDENBOROUGH), Desulfovibrio vulgaris ATCC 29579, Desulfovibrio vulgaris str. Hildenborough, Desulfovibrio vulgaris subsp. vulgaris (strain Hildenborough), Desulfovibrio vulgaris subsp. vulgaris ATCC 29579, Desulfovibrio vulgaris subsp. vulgaris str. Hildenborough
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