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DVU_0075 DVU_0075 DVU_0351 DVU_0351 DVU_0072 DVU_0072 rfbB rfbB DVU_0076 DVU_0076 DVU_0074 DVU_0074 rfbA rfbA DVU_3176 DVU_3176 DVU_0073 DVU_0073 DVU_2052 DVU_2052 DVU_0281 DVU_0281
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
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colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
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[Homology]
Score
DVU_0075Aminotransferase, DegT/DnrJ/EryC1/StrS family; Identified by match to protein family HMM PF01041; Belongs to the DegT/DnrJ/EryC1 family. (377 aa)    
Predicted Functional Partners:
DVU_0351
Cytidine 5'monophosphate N-acetylneuraminic acid synthetase/polysaccharide biosynthesis protein; Identified by similarity to SP:P39627; similar to GP:4741793.
 
  
 0.765
DVU_0072
Glucose-1-phosphate cytidylyl-transferase; Identified by similarity to SP:P26396; match to protein family HMM PF00483.
  
  
 0.761
rfbB
dTDP-glucose 4,6-dehydratase; Identified by match to protein family HMM PF01370; match to protein family HMM TIGR01181; Belongs to the NAD(P)-dependent epimerase/dehydratase family. dTDP-glucose dehydratase subfamily.
 
  
 0.717
DVU_0076
Glycosyl transferase, group 2 family protein; Identified by match to protein family HMM PF00535.
  
  
 0.691
DVU_0074
Polysaccharide biosynthesis domain protein; Identified by similarity to SP:P39631.
  
  
 0.576
rfbA
Glucose-1-phosphate thymidylyltransferase; Catalyzes the formation of dTDP-glucose, from dTTP and glucose 1-phosphate, as well as its pyrophosphorolysis. Belongs to the glucose-1-phosphate thymidylyltransferase family.
  
  
 0.557
DVU_3176
Identified by similarity to SP:P39861; match to protein family HMM PF00984; match to protein family HMM PF03720; match to protein family HMM PF03721.
  
  
 0.552
DVU_0073
CDP-glucose-4,6-dehydratase, putative; Identified by similarity to GP:1197641.
  
  
 0.520
DVU_2052
Glycosyl transferase, group 2 family protein; Identified by match to protein family HMM PF00535.
 
  
 0.496
DVU_0281
Exopolysaccharide biosynthesis protein, putative; Identified by match to protein family HMM PF02397.
 
  
 0.485
Your Current Organism:
Desulfovibrio vulgaris Hildenborough
NCBI taxonomy Id: 882
Other names: D. vulgaris str. Hildenborough, Desulfovibrio vulgaris (STRAIN HILDENBOROUGH), Desulfovibrio vulgaris ATCC 29579, Desulfovibrio vulgaris str. Hildenborough, Desulfovibrio vulgaris subsp. vulgaris (strain Hildenborough), Desulfovibrio vulgaris subsp. vulgaris ATCC 29579, Desulfovibrio vulgaris subsp. vulgaris str. Hildenborough
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