Export your current network:
... as a vector graphic:
SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc
... as short tabular text output:
TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)
... as tabular text output:
TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)
... as an XML summary:
structured XML interaction data, according to the 'PSI-MI' data standard
... protein node degrees:
node degree of proteins in your network (given the current score cut-off)
... network coordinates:
a flat-file format describing the coordinates and colors of nodes in the network
... protein sequences:
MFA: multi-fasta format - containing the aminoacid sequences in the network
... protein annotations:
a tab-delimited file describing the names, domains and descriptions of proteins in your network
... functional annotations:
a tab-delimited file containing all known functional terms of protiens in your network
Browse interactions in tabular form:
| node1 | node2 | node1 annotation | node2 annotation | score |
| DVU_0099 | DVU_0100 | TonB domain protein; Interacts with outer membrane receptor proteins that carry out high-affinity binding and energy dependent uptake into the periplasmic space of specific substrates. It could act to transduce energy from the cytoplasmic membrane to specific energy-requiring processes in the outer membrane, resulting in the release into the periplasm of ligands bound by these outer membrane proteins. Belongs to the TonB family. | TonB-dependent receptor; Identified by match to protein family HMM PF00593. | 0.940 |
| DVU_0099 | DVU_0102 | TonB domain protein; Interacts with outer membrane receptor proteins that carry out high-affinity binding and energy dependent uptake into the periplasmic space of specific substrates. It could act to transduce energy from the cytoplasmic membrane to specific energy-requiring processes in the outer membrane, resulting in the release into the periplasm of ligands bound by these outer membrane proteins. Belongs to the TonB family. | Cation ABC transporter, periplasmic binding protein; Identified by match to protein family HMM PF01297. | 0.704 |
| DVU_0099 | DVU_0266 | TonB domain protein; Interacts with outer membrane receptor proteins that carry out high-affinity binding and energy dependent uptake into the periplasmic space of specific substrates. It could act to transduce energy from the cytoplasmic membrane to specific energy-requiring processes in the outer membrane, resulting in the release into the periplasm of ligands bound by these outer membrane proteins. Belongs to the TonB family. | Hypothetical protein; Identified by Glimmer2; putative. | 0.527 |
| DVU_0100 | DVU_0099 | TonB-dependent receptor; Identified by match to protein family HMM PF00593. | TonB domain protein; Interacts with outer membrane receptor proteins that carry out high-affinity binding and energy dependent uptake into the periplasmic space of specific substrates. It could act to transduce energy from the cytoplasmic membrane to specific energy-requiring processes in the outer membrane, resulting in the release into the periplasm of ligands bound by these outer membrane proteins. Belongs to the TonB family. | 0.940 |
| DVU_0100 | DVU_0101 | TonB-dependent receptor; Identified by match to protein family HMM PF00593. | Methlytransferase, UbiE/COQ5 family; Identified by match to protein family HMM PF01209. | 0.758 |
| DVU_0100 | DVU_0102 | TonB-dependent receptor; Identified by match to protein family HMM PF00593. | Cation ABC transporter, periplasmic binding protein; Identified by match to protein family HMM PF01297. | 0.822 |
| DVU_0100 | DVU_0266 | TonB-dependent receptor; Identified by match to protein family HMM PF00593. | Hypothetical protein; Identified by Glimmer2; putative. | 0.710 |
| DVU_0100 | DVU_2075 | TonB-dependent receptor; Identified by match to protein family HMM PF00593. | Identified by match to protein family HMM PF00991. | 0.705 |
| DVU_0100 | DVU_2263 | TonB-dependent receptor; Identified by match to protein family HMM PF00593. | Outer membrane autotransporter barrel domain protein; Identified by match to protein family HMM PF03797; match to protein family HMM TIGR01414. | 0.720 |
| DVU_0100 | DVU_2390 | TonB-dependent receptor; Identified by match to protein family HMM PF00593. | TonB domain protein; Identified by similarity to GP:19577340; match to protein family HMM PF03544; match to protein family HMM TIGR01352. | 0.720 |
| DVU_0100 | DVU_2808 | TonB-dependent receptor; Identified by match to protein family HMM PF00593. | TonB domain protein; Identified by similarity to GP:17982262; match to protein family HMM TIGR01352. | 0.722 |
| DVU_0100 | DVU_3101 | TonB-dependent receptor; Identified by match to protein family HMM PF00593. | tonB protein, putative; Identified by similarity to GP:14595286; match to protein family HMM TIGR01352. | 0.766 |
| DVU_0100 | DVU_3102 | TonB-dependent receptor; Identified by match to protein family HMM PF00593. | Hypothetical protein; Identified by Glimmer2; putative. | 0.718 |
| DVU_0101 | DVU_0100 | Methlytransferase, UbiE/COQ5 family; Identified by match to protein family HMM PF01209. | TonB-dependent receptor; Identified by match to protein family HMM PF00593. | 0.758 |
| DVU_0101 | DVU_0102 | Methlytransferase, UbiE/COQ5 family; Identified by match to protein family HMM PF01209. | Cation ABC transporter, periplasmic binding protein; Identified by match to protein family HMM PF01297. | 0.527 |
| DVU_0102 | DVU_0099 | Cation ABC transporter, periplasmic binding protein; Identified by match to protein family HMM PF01297. | TonB domain protein; Interacts with outer membrane receptor proteins that carry out high-affinity binding and energy dependent uptake into the periplasmic space of specific substrates. It could act to transduce energy from the cytoplasmic membrane to specific energy-requiring processes in the outer membrane, resulting in the release into the periplasm of ligands bound by these outer membrane proteins. Belongs to the TonB family. | 0.704 |
| DVU_0102 | DVU_0100 | Cation ABC transporter, periplasmic binding protein; Identified by match to protein family HMM PF01297. | TonB-dependent receptor; Identified by match to protein family HMM PF00593. | 0.822 |
| DVU_0102 | DVU_0101 | Cation ABC transporter, periplasmic binding protein; Identified by match to protein family HMM PF01297. | Methlytransferase, UbiE/COQ5 family; Identified by match to protein family HMM PF01209. | 0.527 |
| DVU_0266 | DVU_0099 | Hypothetical protein; Identified by Glimmer2; putative. | TonB domain protein; Interacts with outer membrane receptor proteins that carry out high-affinity binding and energy dependent uptake into the periplasmic space of specific substrates. It could act to transduce energy from the cytoplasmic membrane to specific energy-requiring processes in the outer membrane, resulting in the release into the periplasm of ligands bound by these outer membrane proteins. Belongs to the TonB family. | 0.527 |
| DVU_0266 | DVU_0100 | Hypothetical protein; Identified by Glimmer2; putative. | TonB-dependent receptor; Identified by match to protein family HMM PF00593. | 0.710 |
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