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DVU_0119 DVU_0119 DVU_0118 DVU_0118 DVU_0120 DVU_0120 DVU_3215 DVU_3215 DVU_0581 DVU_0581 DVU_3238 DVU_3238 DVU_0145 DVU_0145 DVU_0140 DVU_0140 DVU_2966 DVU_2966 DVU_2963 DVU_2963 DVU_0449 DVU_0449
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
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Textmining
[Homology]
Score
DVU_0119Sensor histidine kinase; Identified by match to protein family HMM PF00512; match to protein family HMM PF00672; match to protein family HMM PF02518. (554 aa)    
Predicted Functional Partners:
DVU_0118
Sigma-54 dependent transcriptional regulator/response regulator; Identified by match to protein family HMM PF00072; match to protein family HMM PF00158; match to protein family HMM PF02954; match to protein family HMM TIGR01199.
 
 0.875
DVU_0120
ABC transporter, substrate-binding protein, putative; Identified by similarity to SP:P16682.
    0.848
DVU_3215
Response regulator; Identified by match to protein family HMM PF00072.
 
 0.778
DVU_0581
Response regulator/anti-anti-sigma factor; Identified by match to protein family HMM PF00072.
 
   0.766
DVU_3238
Response regulator; Identified by match to protein family HMM PF00072.
 
 0.766
DVU_0145
Response regulator; Identified by match to protein family HMM PF00072.
 
   0.751
DVU_0140
Response regulator; Identified by match to protein family HMM PF00072.
 
 
 0.749
DVU_2966
Response regulator; Identified by match to protein family HMM PF00072.
 
 0.744
DVU_2963
Response regulator; Identified by match to protein family HMM PF00072.
 
   0.737
DVU_0449
Sensor/response regulator; Involved in chemotaxis. Part of a chemotaxis signal transduction system that modulates chemotaxis in response to various stimuli. Catalyzes the demethylation of specific methylglutamate residues introduced into the chemoreceptors (methyl-accepting chemotaxis proteins or MCP) by CheR. Also mediates the irreversible deamidation of specific glutamine residues to glutamic acid. Belongs to the CheB family.
 
0.732
Your Current Organism:
Desulfovibrio vulgaris Hildenborough
NCBI taxonomy Id: 882
Other names: D. vulgaris str. Hildenborough, Desulfovibrio vulgaris (STRAIN HILDENBOROUGH), Desulfovibrio vulgaris ATCC 29579, Desulfovibrio vulgaris str. Hildenborough, Desulfovibrio vulgaris subsp. vulgaris (strain Hildenborough), Desulfovibrio vulgaris subsp. vulgaris ATCC 29579, Desulfovibrio vulgaris subsp. vulgaris str. Hildenborough
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