STRINGSTRING
DVU_0121 DVU_0121 DVU_0119 DVU_0119 DVU_0118 DVU_0118 DVU_0120 DVU_0120 DVU_0122 DVU_0122 DVU_0123 DVU_0123 DVU_0791 DVU_0791 yfiA yfiA DVU_0124 DVU_0124
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
DVU_0121Conserved hypothetical protein; Identified by similarity to OMNI:NTL01MT00980. (147 aa)    
Predicted Functional Partners:
DVU_0119
Sensor histidine kinase; Identified by match to protein family HMM PF00512; match to protein family HMM PF00672; match to protein family HMM PF02518.
     
 0.621
DVU_0118
Sigma-54 dependent transcriptional regulator/response regulator; Identified by match to protein family HMM PF00072; match to protein family HMM PF00158; match to protein family HMM PF02954; match to protein family HMM TIGR01199.
       0.620
DVU_0120
ABC transporter, substrate-binding protein, putative; Identified by similarity to SP:P16682.
       0.620
DVU_0122
Hypothetical protein; Identified by Glimmer2; putative.
       0.554
DVU_0123
Membrane protein, putative; Identified by similarity to OMNI:NTL02ML1727; match to protein family HMM PF03601.
       0.551
DVU_0791
methylated-DNA--protein-cysteine methyltransferase, DNA-binding domain protein; Identified by match to protein family HMM PF01035; match to protein family HMM TIGR00589.
  
    0.454
yfiA
Ribosomal subunit interface protein; Required for dimerization of active 70S ribosomes into 100S ribosomes in stationary phase; 100S ribosomes are translationally inactive and sometimes present during exponential growth.
   
  
 0.452
DVU_0124
Hypothetical protein; Identified by Glimmer2; putative.
       0.408
Your Current Organism:
Desulfovibrio vulgaris Hildenborough
NCBI taxonomy Id: 882
Other names: D. vulgaris str. Hildenborough, Desulfovibrio vulgaris (STRAIN HILDENBOROUGH), Desulfovibrio vulgaris ATCC 29579, Desulfovibrio vulgaris str. Hildenborough, Desulfovibrio vulgaris subsp. vulgaris (strain Hildenborough), Desulfovibrio vulgaris subsp. vulgaris ATCC 29579, Desulfovibrio vulgaris subsp. vulgaris str. Hildenborough
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