STRINGSTRING
DVU_0124 DVU_0124 DVU_0123 DVU_0123 DVU_0122 DVU_0122 DVU_0126 DVU_0126 DVU_0127 DVU_0127 DVU_0125 DVU_0125 DVU_0121 DVU_0121
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
DVU_0124Hypothetical protein; Identified by Glimmer2; putative. (62 aa)    
Predicted Functional Partners:
DVU_0123
Membrane protein, putative; Identified by similarity to OMNI:NTL02ML1727; match to protein family HMM PF03601.
  
    0.564
DVU_0122
Hypothetical protein; Identified by Glimmer2; putative.
  
    0.553
DVU_0126
ABC transporter, ATP-binding protein; Identified by similarity to SP:P37624; match to protein family HMM PF00005.
  
    0.445
DVU_0127
Membrane protein, putative; Identified by similarity to SP:P75774.
  
    0.445
DVU_0125
Hypothetical protein; Identified by Glimmer2; putative.
       0.442
DVU_0121
Conserved hypothetical protein; Identified by similarity to OMNI:NTL01MT00980.
       0.408
Your Current Organism:
Desulfovibrio vulgaris Hildenborough
NCBI taxonomy Id: 882
Other names: D. vulgaris str. Hildenborough, Desulfovibrio vulgaris (STRAIN HILDENBOROUGH), Desulfovibrio vulgaris ATCC 29579, Desulfovibrio vulgaris str. Hildenborough, Desulfovibrio vulgaris subsp. vulgaris (strain Hildenborough), Desulfovibrio vulgaris subsp. vulgaris ATCC 29579, Desulfovibrio vulgaris subsp. vulgaris str. Hildenborough
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