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DVU_0139 DVU_0139 DVU_0140 DVU_0140 DVU_2963 DVU_2963 DVU_3215 DVU_3215 DVU_3238 DVU_3238 DVU_2966 DVU_2966 DVU_0581 DVU_0581 DVU_0145 DVU_0145 DVU_0271 DVU_0271 DVU_0449 DVU_0449 DVU_0482 DVU_0482
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
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colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
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[Homology]
Score
DVU_0139Sensor histidine kinase; Identified by match to protein family HMM PF00512; match to protein family HMM PF02518. (570 aa)    
Predicted Functional Partners:
DVU_0140
Response regulator; Identified by match to protein family HMM PF00072.
 
 0.895
DVU_2963
Response regulator; Identified by match to protein family HMM PF00072.
 
   0.822
DVU_3215
Response regulator; Identified by match to protein family HMM PF00072.
 
 0.814
DVU_3238
Response regulator; Identified by match to protein family HMM PF00072.
 
 0.795
DVU_2966
Response regulator; Identified by match to protein family HMM PF00072.
 
 0.792
DVU_0581
Response regulator/anti-anti-sigma factor; Identified by match to protein family HMM PF00072.
 
   0.749
DVU_0145
Response regulator; Identified by match to protein family HMM PF00072.
 
   0.740
DVU_0271
Response regulator; Identified by match to protein family HMM PF00072; match to protein family HMM PF02518.
 
 
   0.725
DVU_0449
Sensor/response regulator; Involved in chemotaxis. Part of a chemotaxis signal transduction system that modulates chemotaxis in response to various stimuli. Catalyzes the demethylation of specific methylglutamate residues introduced into the chemoreceptors (methyl-accepting chemotaxis proteins or MCP) by CheR. Also mediates the irreversible deamidation of specific glutamine residues to glutamic acid. Belongs to the CheB family.
 
0.719
DVU_0482
Sensory box histidine kinase/response regulator; Identified by match to protein family HMM PF00072; match to protein family HMM PF00512; match to protein family HMM PF00989; match to protein family HMM PF02518; match to protein family HMM TIGR00229.
 
 
 0.715
Your Current Organism:
Desulfovibrio vulgaris Hildenborough
NCBI taxonomy Id: 882
Other names: D. vulgaris str. Hildenborough, Desulfovibrio vulgaris (STRAIN HILDENBOROUGH), Desulfovibrio vulgaris ATCC 29579, Desulfovibrio vulgaris str. Hildenborough, Desulfovibrio vulgaris subsp. vulgaris (strain Hildenborough), Desulfovibrio vulgaris subsp. vulgaris ATCC 29579, Desulfovibrio vulgaris subsp. vulgaris str. Hildenborough
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