STRINGSTRING
DVU_0169 DVU_0169 DVU_0168 DVU_0168 DVU_0167 DVU_0167 DVU_0165 DVU_0165 DVU_0166 DVU_0166 DVU_2461 DVU_2461 DVU_2462 DVU_2462 DVU_2576 DVU_2576 DVU_2084 DVU_2084 poR poR DVU_0512 DVU_0512
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
DVU_0169Oligopeptide/dipeptide ABC transporter, periplasmic oligopeptide/dipeptide-binding protein; Identified by match to protein family HMM PF00496. (520 aa)    
Predicted Functional Partners:
DVU_0168
Oligopeptide/dipeptide ABC transporter, permease protein; Identified by match to protein family HMM PF00528.
 0.997
DVU_0167
Oligopeptide/dipeptide ABC transporter, permease protein; Identified by match to protein family HMM PF00528.
 0.994
DVU_0165
Oligopeptide/dipeptide ABC transporter, ATP-binding protein; Identified by similarity to SP:P42065; match to protein family HMM PF00005; match to protein family HMM TIGR01727; Belongs to the ABC transporter superfamily.
 
 
 0.991
DVU_0166
Oligopeptide/dipeptide ABC transporter, ATP-binding protein; Identified by match to protein family HMM PF00005; match to protein family HMM TIGR01727; Belongs to the ABC transporter superfamily.
 
 
 0.991
DVU_2461
Oligopeptide ABC transporter, permease protein; Identified by similarity to SP:P42062; match to protein family HMM PF00528.
 0.987
DVU_2462
Oligopeptide ABC transporter, permease protein; Identified by similarity to SP:P42063; match to protein family HMM PF00528.
 0.975
DVU_2576
Oligopeptide ABC transporter, ATP-binding protein; Identified by similarity to SP:P42064; match to protein family HMM PF00005; match to protein family HMM TIGR01727; Belongs to the ABC transporter superfamily.
 
 
 0.956
DVU_2084
Oligopeptide-binding protein, putative; Identified by similarity to SP:P42061; match to protein family HMM PF00496.
  
  
 
0.909
poR
Pyruvate-ferredoxin oxidoreductase; Identified by similarity to GP:1770208; match to protein family HMM PF00037; match to protein family HMM PF01558; match to protein family HMM PF01855.
  
    0.782
DVU_0512
Flagellar basal-body rod protein, putative; Identified by similarity to SP:P75939; match to protein family HMM PF00460; Belongs to the flagella basal body rod proteins family.
   
   0.558
Your Current Organism:
Desulfovibrio vulgaris Hildenborough
NCBI taxonomy Id: 882
Other names: D. vulgaris str. Hildenborough, Desulfovibrio vulgaris (STRAIN HILDENBOROUGH), Desulfovibrio vulgaris ATCC 29579, Desulfovibrio vulgaris str. Hildenborough, Desulfovibrio vulgaris subsp. vulgaris (strain Hildenborough), Desulfovibrio vulgaris subsp. vulgaris ATCC 29579, Desulfovibrio vulgaris subsp. vulgaris str. Hildenborough
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