STRINGSTRING
DVU_0186 DVU_0186 DVU_0185 DVU_0185 DVU_1019 DVU_1019 DVU_0849 DVU_0849 DVU_1020 DVU_1020 DVU_0184 DVU_0184 DVU_0595 DVU_0595 DVU_2043 DVU_2043
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
DVU_0186Conserved hypothetical protein; Identified by similarity to OMNI:AF2126; match to protein family HMM PF02596. (259 aa)    
Predicted Functional Partners:
DVU_0185
Hypothetical protein; Identified by Glimmer2; putative.
       0.518
DVU_1019
Conserved domain protein; Identified by similarity to OMNI:VCA1081.
  
    0.500
DVU_0849
Heterodisulfide reductase, iron-sulfur-binding subunit, putative; Identified by match to protein family HMM PF00037; match to protein family HMM PF02662.
 
    0.490
DVU_1020
HD domain/sensory box protein; Identified by match to protein family HMM PF01966; match to protein family HMM TIGR00229.
  
    0.474
DVU_0184
Hypothetical protein; Identified by Glimmer2; putative.
  
    0.471
DVU_0595
Conserved hypothetical protein; Identified by similarity to OMNI:AF0913.
  
    0.459
DVU_2043
Conserved hypothetical protein; Identified by similarity to GP:20095140.
  
     0.456
Your Current Organism:
Desulfovibrio vulgaris Hildenborough
NCBI taxonomy Id: 882
Other names: D. vulgaris str. Hildenborough, Desulfovibrio vulgaris (STRAIN HILDENBOROUGH), Desulfovibrio vulgaris ATCC 29579, Desulfovibrio vulgaris str. Hildenborough, Desulfovibrio vulgaris subsp. vulgaris (strain Hildenborough), Desulfovibrio vulgaris subsp. vulgaris ATCC 29579, Desulfovibrio vulgaris subsp. vulgaris str. Hildenborough
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