STRINGSTRING
DVU_0192 DVU_0192 DVU_0194 DVU_0194 DVU_2881 DVU_2881 DVU_0193 DVU_0193 DVU_0195 DVU_0195 DVU_2878 DVU_2878 DVU_0191 DVU_0191 DVU_1501 DVU_1501 DVU_1502 DVU_1502 DVU_1505 DVU_1505 DVU_2851 DVU_2851
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
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Textmining
[Homology]
Score
DVU_0192Adenine specific DNA methyltransferase, putative; Identified by match to protein family HMM PF01555; match to protein family HMM PF02195; Belongs to the N(4)/N(6)-methyltransferase family. (452 aa)    
Predicted Functional Partners:
DVU_0194
Terminase, large subunit, putative; Identified by similarity to GP:6723224.
  
 0.941
DVU_2881
Phage-plasmid primase, P4 family; Identified by match to protein family HMM PF03288; match to protein family HMM TIGR01613.
 
    0.909
DVU_0193
Hypothetical protein; Identified by Glimmer2; putative.
  
  
 0.900
DVU_0195
Hypothetical protein; Identified by Glimmer2; putative.
  
  
 0.895
DVU_2878
Adenine specific DNA methyltransferase, putative; Identified by match to protein family HMM PF01555; match to protein family HMM PF02195; Belongs to the N(4)/N(6)-methyltransferase family.
 
  
0.880
DVU_0191
Conserved hypothetical protein; Identified by similarity to OMNI:CC3049.
  
    0.870
DVU_1501
Identified by match to protein family HMM PF00574.
 
  
 0.860
DVU_1502
Portal protein, HK97 family; Identified by match to protein family HMM PF04860; match to protein family HMM TIGR01537.
 
  
 0.839
DVU_1505
Holin, putative; Identified by match to protein family HMM PF01844.
 
  
 0.831
DVU_2851
Tail protein, putative; Identified by similarity to GP:19483757.
   
    0.825
Your Current Organism:
Desulfovibrio vulgaris Hildenborough
NCBI taxonomy Id: 882
Other names: D. vulgaris str. Hildenborough, Desulfovibrio vulgaris (STRAIN HILDENBOROUGH), Desulfovibrio vulgaris ATCC 29579, Desulfovibrio vulgaris str. Hildenborough, Desulfovibrio vulgaris subsp. vulgaris (strain Hildenborough), Desulfovibrio vulgaris subsp. vulgaris ATCC 29579, Desulfovibrio vulgaris subsp. vulgaris str. Hildenborough
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