STRINGSTRING
DVU_0196 DVU_0196 DVU_0198 DVU_0198 DVU_0197 DVU_0197 DVU_0199 DVU_0199 DVU_0200 DVU_0200 DVU_0201 DVU_0201 DVU_0202 DVU_0202 DVU_0203 DVU_0203 DVU_0204 DVU_0204 DVU_0205 DVU_0205 DVU_0206 DVU_0206
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
DVU_0196Hypothetical protein; Identified by Glimmer2; putative. (131 aa)    
Predicted Functional Partners:
DVU_0198
Minor capsid protein C, degenerate; Identified by match to protein family HMM PF01343.
       0.777
DVU_0197
Phage portal protein, lambda family; Identified by match to protein family HMM PF05136; match to protein family HMM TIGR01539.
       0.773
DVU_0199
Conserved hypothetical protein; Identified by similarity to OMNI:NTL01RS0859.
       0.765
DVU_0200
Major head protein; Identified by match to protein family HMM PF03864.
       0.741
DVU_0201
Hypothetical protein; Identified by Glimmer2; putative.
       0.735
DVU_0202
Holin; Identified by match to protein family HMM TIGR01593.
       0.735
DVU_0203
Conserved hypothetical protein; Identified by match to protein family HMM PF05838.
       0.675
DVU_0204
Lipoprotein, putative.
       0.632
DVU_0205
Hypothetical protein; Identified by Glimmer2; putative.
       0.632
DVU_0206
Hypothetical protein; Identified by Glimmer2; putative.
       0.632
Your Current Organism:
Desulfovibrio vulgaris Hildenborough
NCBI taxonomy Id: 882
Other names: D. vulgaris str. Hildenborough, Desulfovibrio vulgaris (STRAIN HILDENBOROUGH), Desulfovibrio vulgaris ATCC 29579, Desulfovibrio vulgaris str. Hildenborough, Desulfovibrio vulgaris subsp. vulgaris (strain Hildenborough), Desulfovibrio vulgaris subsp. vulgaris ATCC 29579, Desulfovibrio vulgaris subsp. vulgaris str. Hildenborough
Server load: low (28%) [HD]
STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.