STRINGSTRING
DVU_0204 DVU_0204 DVU_0205 DVU_0205 DVU_0206 DVU_0206 DVU_0208 DVU_0208 DVU_0201 DVU_0201 DVU_0209 DVU_0209 DVU_0200 DVU_0200 DVU_0203 DVU_0203 DVU_0211 DVU_0211 DVU_0207 DVU_0207 DVU_0210 DVU_0210
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
DVU_0204Lipoprotein, putative. (136 aa)    
Predicted Functional Partners:
DVU_0205
Hypothetical protein; Identified by Glimmer2; putative.
  
    0.963
DVU_0206
Hypothetical protein; Identified by Glimmer2; putative.
  
    0.955
DVU_0208
Hypothetical protein; Identified by Glimmer2; putative.
  
    0.949
DVU_0201
Hypothetical protein; Identified by Glimmer2; putative.
  
    0.946
DVU_0209
Conserved hypothetical protein; Identified by similarity to GP:1834290.
  
    0.943
DVU_0200
Major head protein; Identified by match to protein family HMM PF03864.
  
    0.910
DVU_0203
Conserved hypothetical protein; Identified by match to protein family HMM PF05838.
  
    0.890
DVU_0211
Tail tube protein, putative; Identified by similarity to SP:P79679.
  
    0.888
DVU_0207
Hypothetical protein; Identified by Glimmer2; putative.
  
    0.882
DVU_0210
Tail sheath protein, putative; Identified by similarity to SP:P79678.
  
    0.820
Your Current Organism:
Desulfovibrio vulgaris Hildenborough
NCBI taxonomy Id: 882
Other names: D. vulgaris str. Hildenborough, Desulfovibrio vulgaris (STRAIN HILDENBOROUGH), Desulfovibrio vulgaris ATCC 29579, Desulfovibrio vulgaris str. Hildenborough, Desulfovibrio vulgaris subsp. vulgaris (strain Hildenborough), Desulfovibrio vulgaris subsp. vulgaris ATCC 29579, Desulfovibrio vulgaris subsp. vulgaris str. Hildenborough
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